WormBase Tree Display for Variation: WBVar00113862

WBVar00113862 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00113862
    Other_name: cbs49383
      cb49383 Paper_evidence: WBPaper00055507
    HGVSg: chrV:g.7949468T>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2051
    Flanking_sequences: aatttattctcatcagaatcacaga actacataggcggcgtagagaccga
    Mapping_target: cb25.fpc2051
    Type_of_mutation: Substitution: T G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: AGCT AluI 369 208 200 149 44 30
        RGCY CviJI, CviTI 185 185 160 121 89 54 54 48 44 30 15 9 6
        AAGCTT HindIII 1000
        GTNAC MaeIII 563 176 146 115
        AATT Sse9I, TasI, Tsp509I, TspEI 167 162 150 113 95 79 71 50 38 27 25 19 4
      Polymorphic_strain_digest: AGCT AluI 215 200 169 154 149 44 39 30
        RGCY CviJI, CviTI 185 154 121 121 89 54 54 48 44 39 31 30 15 9 6
        AAGCTT HindIII 713 287
        GTNAC MaeIII 709 176 115
        AATT Sse9I, TasI, Tsp509I, TspEI 167 162 150 120 113 79 71 50 38 27 19 4
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00030386
    Transcript: CBG08629.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: CBG08629.1:c.516A>C
        HGVSp: CBP39839.1:p.Val172%3D
        cDNA_position: 738
        CDS_position: 516
        Protein_position: 172
        Exon_number: 6/12
        Codon_change: gtA/gtC
        Amino_acid_change: V
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP