WormBase Tree Display for Variation: WBVar00113859

WBVar00113859 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00113859
    Other_name: cbs49380
    HGVSg: chrV:g.7968518A>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2051
    Flanking_sequences: tcttcctcttcacttcaccagtaattttctccgctgaacatcaaacttgg tcttcgatccaaggacaatggaaggccactacaaggactacaccaacatc
    Mapping_target: cb25.fpc2051
    Type_of_mutation: Substitution: T G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CTNAG BstDEI, DdeI 1000
        TCGA EsaBC3I, TaqI, TthHB8I 404 365 130 101
        AATT Sse9I, TasI, Tsp509I, TspEI 406 235 149 52 45 42 39 32
      Polymorphic_strain_digest: CTNAG BstDEI, DdeI 564 436
        TCGA EsaBC3I, TaqI, TthHB8I 505 365 130
        AATT Sse9I, TasI, Tsp509I, TspEI 384 235 149 52 45 42 39 32 22
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00030383
    Transcript: CBG08624a.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG08624a.1:c.532T>G
        HGVSp: CBP28267.1:p.Phe178Val
        cDNA_position: 543
        CDS_position: 532
        Protein_position: 178
        Exon_number: 4/7
        Codon_change: Ttc/Gtc
        Amino_acid_change: F/V
      CBG08624b.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG08624b.1:c.331T>G
        HGVSp: CBP40305.1:p.Phe111Val
        cDNA_position: 592
        CDS_position: 331
        Protein_position: 111
        Exon_number: 3/6
        Codon_change: Ttc/Gtc
        Amino_acid_change: F/V
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP