WormBase Tree Display for Variation: WBVar00113856

WBVar00113856 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00113856
    Other_name: cbs49377
    HGVSg: chrV:g.7968615A>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2051
    Flanking_sequences: atccttgacatggtctgtcccctaatggtcaaaatttacttccgtggcta cgaacatgtgcagttctgatggctccaattctctacggatgcttcttctt
    Mapping_target: cb25.fpc2051
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CTNAG BstDEI, DdeI 1000
        TCGA EsaBC3I, TaqI, TthHB8I 501 268 130 101
        AATT Sse9I, TasI, Tsp509I, T, spEI 406 235 213 45 42 33 26
      Polymorphic_strain_digest: CTNAG BstDEI, DdeI 533 467
        TCGA EsaBC3I, TaqI, TthHB8I 602 268 130
        AATT Sse9I, TasI, Tsp509I, T, spEI 384 246 235 45 42 26 22
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00030383
    Transcript: CBG08624a.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: CBG08624a.1:c.435T>C
        HGVSp: CBP28267.1:p.Tyr145%3D
        cDNA_position: 446
        CDS_position: 435
        Protein_position: 145
        Exon_number: 4/7
        Codon_change: taT/taC
        Amino_acid_change: Y
      CBG08624b.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: CBG08624b.1:c.234T>C
        HGVSp: CBP40305.1:p.Tyr78%3D
        cDNA_position: 495
        CDS_position: 234
        Protein_position: 78
        Exon_number: 3/6
        Codon_change: taT/taC
        Amino_acid_change: Y
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP