WormBase Tree Display for Variation: WBVar00113795
expand all nodes | collapse all nodes | view schema
| WBVar00113795 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00113795 | ||||
| Other_name | cbs49316 | |||||
| cb49316 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | ||||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc2051 | ||
| Flanking_sequences | ttcacttattcatttttcaggtaaa | tgtccgacgcactcgtgtggcaagt | ||||
| Mapping_target | cb25.fpc2051 | |||||
| Type_of_mutation | Substitution | T | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | ACCGGT | AgeI, AsiAI, BshTI, CspAI, PinAI | 1000 | ||
| WCCGGW | BetI, BsaWI | 725 208 67 | ||||
| RCCGGY | Bse118I, BsrFI, BssAI, Cfr10I | 1000 | ||||
| CCGG | BsiSI, HapII, HpaII, MspI | 668 207 68 57 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 301 255 190 170 84 | ||||
| CAC | HindI | 212 144 73 65 54 50 48 45 44 44 38 33 31 31 27 17 16 14 6 6 2 | ||||
| GTNAC | MaeIII | 575 425 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 280 170 158 149 68 48 44 35 28 20 | ||||
| Polymorphic_strain_digest | ACCGGT | AgeI, AsiAI, BshTI, CspAI, PinAI | 813 187 | |||
| WCCGGW | BetI, BsaWI | 605 208 120 67 | ||||
| RCCGGY | Bse118I, BsrFI, BssAI, Cfr10I | 813 187 | ||||
| CCGG | BsiSI, HapII, HpaII, MspI | 548 207 120 68 57 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 425 301 274 | ||||
| CAC | HindI | 212 130 75 73 65 54 50 48 45 44 38 33 31 27 17 16 14 14 6 6 2 | ||||
| GTNAC | MaeIII | 1000 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 280 170 158 149 68 64 48 35 28 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00030331 | ||||
| Transcript | CBG08569a.1 | VEP_consequence | start_lost | |||
| VEP_impact | HIGH | |||||
| HGVSp | CBP08023.1:p.Leu1? | |||||
| cDNA_position | 6 | |||||
| CDS_position | 1 | |||||
| Protein_position | 1 | |||||
| Exon_number | 2/4 | |||||
| Codon_change | Ttg/Atg | |||||
| Amino_acid_change | L/M | |||||
| CBG08569b.1 | VEP_consequence | start_lost | ||||
| VEP_impact | HIGH | |||||
| HGVSp | CBP42619.1:p.Leu1? | |||||
| cDNA_position | 1 | |||||
| CDS_position | 1 | |||||
| Protein_position | 1 | |||||
| Exon_number | 1/3 | |||||
| Codon_change | Ttg/Atg | |||||
| Amino_acid_change | L/M | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
