WormBase Tree Display for Variation: WBVar00113787

WBVar00113787 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00113787
    Other_name: cbs49308
      cb49308 Paper_evidence: WBPaper00055507
    HGVSg
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2051
    Flanking_sequences: ttttgtccatgttctcttttcactg ctacaagacatcttctagttttcaa
    Mapping_target: cb25.fpc2051
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CCGC AciI 521 429 50
        GATC BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI 283 259 165 144 130 19
        AGATCT BglII 554 446
        CCTNNNNNAGG BstENI, EcoNI, XagI 1000
        RGATCY BstX2I, BstYI, MflI, PsuI, XhoII 554 446
        RGCY CviJI, CviTI 294 190 130 123 77 73 54 34 14 11
        GATATC Eco32I, EcoRV 1000
        CAC HindI 117 113 103 95 69 68 65 52 49 48 46 36 32 32 30 22 21 2
      Polymorphic_strain_digest: CCGC AciI 521 479
        GATC BfuCI, BscFI, Bsp143I, BstENII, BstKTI, ChaI, DpnI, DpnII, Kzo9I, MboI, NdeII, Sau3AI 403 283 165 130 19
        AGATCT BglII 1000
        CCTNNNNNAGG BstENI, EcoNI, XagI 502 498
        RGATCY BstX2I, BstYI, MflI, PsuI, XhoII 1000
        RGCY CviJI, CviTI 217 190 130 123 77 77 73 54 34 14 11
        GATATC Eco32I, EcoRV 894 106
        CAC HindI 127 117 103 74 69 68 65 52 49 48 46 36 32 31 30 22 21 8 2
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00030329
    Transcript: CBG08566.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        Intron_number: 2/8
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP