WormBase Tree Display for Variation: WBVar00113741

WBVar00113741 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00113741
    Other_name: cbs49262
    HGVSg: chrV:g.8173639G>A
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2051
    Flanking_sequences: aaatttcgctagctactcatcatattctttcaattagttataaaattatg tatgcccacaatgtattctgctcattacatttcgaattctctcgtcatgt
    Mapping_target: cb25.fpc2051
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: ATTAAT AseI, AsnI, PshBI, VspI 1000
        TCGA EsaBC3I, TaqI, TthHB8I 431 422 102 45
        CAC HindI 199 194 145 106 103 66 47 35 33 19 16 13 13 9 2
        TTAA MseI, Tru1I, Tru9I 240 198 180 162 123 97
      Polymorphic_strain_digest: ATTAAT AseI, AsnI, PshBI, VspI 990 10
        TCGA EsaBC3I, TaqI, TthHB8I 431 316 106 102 45
        CAC HindI 199 194 124 106 103 66 47 35 33 21 19 16 13 13 9 2
        TTAA MseI, Tru1I, Tru9I 240 198 180 152 123 97 10
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00030323
      WBGene00030325
    Transcript: CBG08558.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG08558.1:c.1108-2026C>T
        Intron_number: 6/7
      CBG08560.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG08560.1:c.*3503+2026G>A
        Intron_number: 13/17
      CBG08560.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG08560.2:c.*3509+2026G>A
        Intron_number: 13/17
      CBG08560.3 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG08560.3:c.*3554+2026G>A
        Intron_number: 12/16
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP