WormBase Tree Display for Variation: WBVar00113736

WBVar00113736 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00113736
    Other_name: cbs49257
    HGVSg: chrV:g.8175819C>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2051
    Flanking_sequences: gatcagagttcttctaccctttctcttcctcgtttttgtcttcttgcttc ctgttatcctttttctcactccaatttcgttgttccactataatctgatt
    Mapping_target: cb25.fpc2051
    Type_of_mutation: Substitution: G C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RGCY CviJI, CviTI 599 178 140 35 31 17
        CAC HindI 88 78 73 69 68 63 60 58 57 55 47 37 34 33 25 20 19 19 18 16 14 9 9 8 6 4 4 3 2 2 2
      Polymorphic_strain_digest: RGCY CviJI, CviTI 477 178 140 122 35 31 17
        CAC HindI 88 78 73 69 68 60 60 58 57 55 47 37 34 33 25 20 19 18 16 14 14 9 9 8 6 5 4 4 3 3 2 2 2
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00030323
      WBGene00030325
    Transcript: CBG08558.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG08558.1:c.1107+277G>C
        Intron_number: 6/7
      CBG08560.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG08560.1:c.*3504-277C>G
        Intron_number: 13/17
      CBG08560.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG08560.2:c.*3510-277C>G
        Intron_number: 13/17
      CBG08560.3 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG08560.3:c.*3555-277C>G
        Intron_number: 12/16
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP