WormBase Tree Display for Variation: WBVar00113734

WBVar00113734 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00113734
    Other_name: cbs49255
    HGVSg: chrV:g.8175879A>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2051
    Flanking_sequences: ggaagaagaagcaaaaacgtagtaaatcttttcgaaacagcgaaatgaag tggtgggaagatcagagttcttctaccctttctcttcctcgtttttgtct
    Mapping_target: cb25.fpc2051
    Type_of_mutation: Substitution: T G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RGCY CviJI, CviTI 574 178 140 48 43 17
        CAC HindI 88 78 73 69 68 63 60 58 55 47 41 37 33 27 26 25 20 19 19 18 16 14 10 9 8 6 4 4 3 2
      Polymorphic_strain_digest: RGCY CviJI, CviTI 452 178 140 122 48 43 17
        CAC HindI 88 78 73 69 68 60 60 58 55 47 41 37 33 27 26 25 20 19 18 16 14 14 10 9 8 6 5 4 4 3 3 2
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00030323
      WBGene00030325
    Transcript: CBG08558.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG08558.1:c.1107+217T>G
        Intron_number: 6/7
      CBG08560.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG08560.1:c.*3504-217A>C
        Intron_number: 13/17
      CBG08560.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG08560.2:c.*3510-217A>C
        Intron_number: 13/17
      CBG08560.3 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG08560.3:c.*3555-217A>C
        Intron_number: 12/16
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP