WormBase Tree Display for Variation: WBVar00113722

WBVar00113722 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00113722
    Other_name: cbs49243
      cb49243 Paper_evidence: WBPaper00055507
    HGVSg
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc2051
    Flanking_sequences: atgaaatccaaaatataactgtcgaagtcacatgtgacag cgtactatggagtggatatattcttccgttttagacaatg
    Mapping_target: cb25.fpc2051
    Type_of_mutation: Substitution: A T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GCNGC BthCI, Fnu4HI, Fsp4HI, ItaI, SatI 845 155
        GANTC HinfI 467 402 131
        CAATTG MfeI, MunI 936 64
        AATT Sse9I, TasI, Tsp509I, TspEI 225 212 156 64 62 55 40 36 28 27 23 21 15 15 14 7
        GAWTC TfiI 467 402 131
        GCWGC TseI 842 158
      Polymorphic_strain_digest: GCNGC BthCI, Fnu4HI, Fsp4HI, ItaI, SatI 1000
        GANTC HinfI 402 309 158 131
        CAATTG MfeI, MunI 502 434 64
        AATT Sse9I, TasI, Tsp509I, TspEI 225 197 156 64 62 55 40 36 28 27 23 21 15 15 15 14 7
        GAWTC TfiI 402 309 158 131
        GCWGC TseI 1000
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00271689
    Transcript: CBG31023.1 VEP_consequence: splice_region_variant,intron_variant
        VEP_impact: LOW
        Intron_number: 3/4
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP