WormBase Tree Display for Variation: WBVar00111165
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| WBVar00111165 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00111165 | ||||
| Other_name | cbs46686 | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0143a | ||
| Flanking_sequences | atcccctaacttctcaaaaactgcatttcggagattctgattcacgaaat | tgattttttttttcgaaaatgctaaatttctaaccattcctatgcttcaa | ||||
| Mapping_target | cb25.fpc0143a | |||||
| Type_of_mutation | Substitution | A | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 201 110 95 91 74 64 59 46 40 40 40 39 24 16 14 9 9 8 8 8 5 | ||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 108 95 91 86 74 64 59 57 46 40 40 39 36 31 24 24 14 9 9 9 9 8 8 8 7 5 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 201 110 95 74 64 63 59 46 40 40 40 39 28 24 16 14 9 9 8 8 8 5 | |||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 108 95 86 74 64 63 59 57 46 40 40 39 36 31 28 24 24 14 9 9 9 9 8 8 8 7 5 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
