WormBase Tree Display for Variation: WBVar00101266
expand all nodes | collapse all nodes | view schema
WBVar00101266 | Name | Public_name | WBVar00101266 | ||
---|---|---|---|---|---|
Other_name | pas6125 | ||||
cewivar00109835 | |||||
T16G12.1.1:c.336A>T | |||||
CE36716:p.Thr112= | |||||
HGVSg | CHROMOSOME_III:g.10048674T>A | ||||
Sequence_details | SMap | S_parent | Sequence | T16G12 | |
Flanking_sequences | tccgtgtatggattgataataccggtgtagacaaattcgatgttgtaaatttgaccagcgaccacaccatttgcatttgtaatcagtgataactgttgcgtagtgtcatcttgtgctataaatcttttcttgtattttttatcaatatacgttcaattccttacaaattgagttgattggcactacagttccatcgatatcaaccactttgtagctttgaattttaaagttataggcattcagaatgaatctgtccgatgcgaccaatgcttccacttgtatcgatgctcttccgtcgaa | gtgaagtttttctctgtaatactgatgttaacttgcatcattcgaaaaagtaataaaaagtttagtacctggtgcatattgaactccagggcttgggaagtatggttggaaccatagactatagtcaatggcatacagatttggtgggagacgtgtttttgttacataaaggctttggcgttttctggaaattcatttttcattattttttgtaatgattatgttttcagagcacaatgagttctagaataaaaatttcagaatagttgatagctgtcacatgcaagatacggcatcttt | |||
Mapping_target | T16G12 | ||||
Type_of_mutation | Substitution | T | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00011803 | |||
Transcript | T16G12.1.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | T16G12.1.1:c.336A>T | ||||
HGVSp | CE36716:p.Thr112= | ||||
cDNA_position | 450 | ||||
CDS_position | 336 | ||||
Protein_position | 112 | ||||
Exon_number | 5/32 | ||||
Codon_change | acA/acT | ||||
Amino_acid_change | T | ||||
Method | WGS_Pasadena_Quinlan |