WormBase Tree Display for Variation: WBVar00101253
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| WBVar00101253 | Name | Public_name | WBVar00101253 | ||
|---|---|---|---|---|---|
| Other_name | pas6112 | ||||
| cewivar00110001 | |||||
| H04D03.2b.1:c.46C>T | |||||
| CE47327:p.Pro16Ser | |||||
| CE44310:p.Pro533Ser | |||||
| H04D03.2a.1:c.1597C>T | |||||
| HGVSg | CHROMOSOME_III:g.10439848G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | H04D03 | |
| Flanking_sequences | gtggtggagttgatccgcggtgtgggatttctggtggaccagtctggaaatttaaaggatttttgaagaataacttatctttaaaactcaatctgacctcttcccgaatcatttcacgtggcttattcactagtttcagttccattttatcgccctctctgacgaatgaaagaccattttcgtggaacgagatcggcggtttctccaattctctgtagtatttcactatgtccccggtgtcgtcaatcgtcttttggtagatcagaaattctgcggcaggctctggagctatcggcgatg | agtctcaatgctctgcggagccggtgacatcgatttttgagccatttttggcttcttcggtgcgactggtttggtgggatctcttgatggcttgccacgtttgcgagcaggagccgaagatgcaggattctgaaaattcaaattttttaaaaagctttttaggaaacgactaggacgatccgagagacaccactgaattaataatccgggagatttagattaacggtcccacaccgcaaatcgtggcgagacccatcgggaacacagcatgtgcctttaaacgagtctccgattgaataa | |||
| Mapping_target | H04D03 | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00010363 | |||
| Transcript | H04D03.2a.1 | VEP_consequence | missense_variant | ||
| VEP_impact | MODERATE | ||||
| HGVSc | H04D03.2a.1:c.1597C>T | ||||
| HGVSp | CE44310:p.Pro533Ser | ||||
| cDNA_position | 1597 | ||||
| CDS_position | 1597 | ||||
| Protein_position | 533 | ||||
| Exon_number | 7/9 | ||||
| Codon_change | Cca/Tca | ||||
| Amino_acid_change | P/S | ||||
| H04D03.2b.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | ||||
| HGVSc | H04D03.2b.1:c.46C>T | ||||
| HGVSp | CE47327:p.Pro16Ser | ||||
| cDNA_position | 46 | ||||
| CDS_position | 46 | ||||
| Protein_position | 16 | ||||
| Exon_number | 1/2 | ||||
| Codon_change | Cca/Tca | ||||
| Amino_acid_change | P/S | ||||
| Method | WGS_Pasadena_Quinlan |
