WormBase Tree Display for Variation: WBVar00099783
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| WBVar00099783 | Evidence | Paper_evidence | WBPaper00040707 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00099783 | |||
| Other_name | pas4642 | ||||
| cewivar00060884 | |||||
| F21A10.1a.1:c.-492C>T | |||||
| C07A4.4:n.136C>T | |||||
| HGVSg | CHROMOSOME_X:g.10176745C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | C07A4 | |
| Flanking_sequences | tctgtcctcccgaccatcaaccgaaatcatctcttatccaatgtgcctcgagtcatttttgcgtgcgatggcactggacttgcaatacaactttttcgtgctctcaccaataacactgcgtctccaacggcaatgtcactcaaaagtcattcttcttgcatgacaaaaaacccgtcggaaaggggaaaagacaggacacctctcttcctcgatgccccgtttccaaccgccgctgatttcccaggccccgttgtgtcaatttgatcgacttggcggtaactgttggcagcactttgattt | cccatttatttcgatcgcggaattcaaattctcgagtttaatggctttccttctagttcttttttcggtcaatttggtcttgcctcttttcactactaattcgagcttcttgagtcacttgactagagagcctcaaattaccagtcctgcaaaaaaaaaattgaagaagaaagtcaaacattttcatgaaaaactgcaacagccttaaccttttgaatttaaaattttgaatatatattttgaaattttttttaaactttaatgtaaagtattctctgcaggagataaaaaatttaatgc | |||
| Mapping_target | C07A4 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (185) | |||||
| Laboratory | QX | ||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01470727 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00008998 | |||
| WBGene00196157 | |||||
| Transcript | C07A4.4 | VEP_consequence | non_coding_transcript_exon_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C07A4.4:n.136C>T | ||||
| cDNA_position | 136 | ||||
| Exon_number | 1/1 | ||||
| F21A10.1a.1 | VEP_consequence | 5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F21A10.1a.1:c.-492C>T | ||||
| cDNA_position | 225 | ||||
| Exon_number | 1/9 | ||||
| Reference | WBPaper00040707 | ||||
| Method | WGS_Pasadena_Quinlan |
