WormBase Tree Display for Variation: WBVar00098933
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| WBVar00098933 | Evidence | Paper_evidence | WBPaper00040707 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00098933 | |||
| Other_name (12) | |||||
| HGVSg | CHROMOSOME_III:g.3098758C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | H06I04 | |
| Flanking_sequences | aatcgcatctcaaactctcgaaatcgaacgtctaaaatcatatcaaaaccagaatctggaaacccatctcctcaagaaacaaatccacgatctcgaaaaagaggtcagaagtgggcggagtcgatttttggagcaacaagagcttttggcggaaatgtcccgggaaatggacattttgctgcgagaaaagctcgaaatgcagcggaattctcaggaactcgagaaaaagtacaaaaaagcaaagtttgcgagccgcgagcttgcgaaaatcctagaaaatgacctgtgcggcacaccgac | acctcaaatctcaaaaatttcgagtcagacgacgagttttttgaggaaaaatctctatttgagaagtcgcgagcactctccagacaacaaattcccaatgatttgttggaaaaaacgcggaaaatcgatttttccgaagctaaaaatgctaaaaatcaagatctaatcgataagctcattgacgaaaacgaaaatcttcaaatttccctgaatcgagagcaaaaaatgacgtcatcactgcaagatgacctggaaaagagccgacggatggttattgatcgggatgagcacattgaggag | |||
| Mapping_target | H06I04 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (21) | |||||
| Laboratory | QX | ||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01444771 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00019167 | |||
| Transcript | H06I04.1e.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | H06I04.1e.1:c.147C>T | ||||
| HGVSp | CE20943:p.Thr49= | ||||
| cDNA_position | 147 | ||||
| CDS_position | 147 | ||||
| Protein_position | 49 | ||||
| Exon_number | 1/3 | ||||
| Codon_change | acC/acT | ||||
| Amino_acid_change | T | ||||
| H06I04.1c.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | H06I04.1c.1:c.147C>T | ||||
| HGVSp | CE31021:p.Thr49= | ||||
| cDNA_position | 147 | ||||
| CDS_position | 147 | ||||
| Protein_position | 49 | ||||
| Exon_number | 1/2 | ||||
| Codon_change | acC/acT | ||||
| Amino_acid_change | T | ||||
| H06I04.1a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | H06I04.1a.1:c.738C>T | ||||
| HGVSp | CE29971:p.Thr246= | ||||
| cDNA_position | 738 | ||||
| CDS_position | 738 | ||||
| Protein_position | 246 | ||||
| Exon_number | 4/7 | ||||
| Codon_change | acC/acT | ||||
| Amino_acid_change | T | ||||
| H06I04.1d.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | H06I04.1d.1:c.588C>T | ||||
| HGVSp | CE50185:p.Thr196= | ||||
| cDNA_position | 588 | ||||
| CDS_position | 588 | ||||
| Protein_position | 196 | ||||
| Exon_number | 3/5 | ||||
| Codon_change | acC/acT | ||||
| Amino_acid_change | T | ||||
| H06I04.1b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | H06I04.1b.1:c.738C>T | ||||
| HGVSp | CE31020:p.Thr246= | ||||
| cDNA_position | 738 | ||||
| CDS_position | 738 | ||||
| Protein_position | 246 | ||||
| Exon_number | 4/6 | ||||
| Codon_change | acC/acT | ||||
| Amino_acid_change | T | ||||
| Reference | WBPaper00040707 | ||||
| Method | WGS_Pasadena_Quinlan |
