WormBase Tree Display for Variation: WBVar00098689
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| WBVar00098689 | Name | Public_name | WBVar00098689 | ||
|---|---|---|---|---|---|
| Other_name | pas3548 | ||||
| cewivar00104705 | |||||
| Y55D5A.5c.1:c.983-334A>T | |||||
| Y55D5A.5d.1:c.842-334A>T | |||||
| Y55D5A.5e.1:c.755-334A>T | |||||
| Y55D5A.5a.1:c.983-334A>T | |||||
| HGVSg | CHROMOSOME_III:g.3013912T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | Y55D5A | |
| Flanking_sequences | acagttgaaacaggagatactcaaaaattaccccaaaggaccgatttttacagaaaaaaaatttttgcgaaaatctggagtttcgtctaaaatatgcaatgcaaagtgatattttttaagacattaattttaattaattttgtgaaaattgccggtttgccgatttgccggaaagtttcaatttttccgaattgttttttttgttaaaggtggagtagagtcattttgaaattttggaatatatatatttttactaaattttcaatgatttttttttgtcaattttgcagaatttttttt | aaaaatgagataatttttcttgaattttgtattttgaaaagattctgaaaaattgaaatttaacgcaaatcggcaatttgccggaattgaaaatttccggcaaatcgacaatttgccggaatcgaaattttccggaaaatcggcatattgccggaattgaaattttccggcaaatcggcaaactgccgacaatgaaaatttccggcaaatcgacaatttgccggaatcgaagttttccgtaaaatcggcatattgccggaattgaaatttccggcaaatcgacaaattgccggaattgaa | |||
| Mapping_target | Y55D5A | ||||
| Type_of_mutation | Substitution | T | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000898 | |||
| Transcript | Y55D5A.5e.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55D5A.5e.1:c.755-334A>T | ||||
| Intron_number | 6/14 | ||||
| Y55D5A.5a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55D5A.5a.1:c.983-334A>T | ||||
| Intron_number | 9/18 | ||||
| Y55D5A.5c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55D5A.5c.1:c.983-334A>T | ||||
| Intron_number | 10/20 | ||||
| Y55D5A.5d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55D5A.5d.1:c.842-334A>T | ||||
| Intron_number | 7/15 | ||||
| Method | WGS_Pasadena_Quinlan |
