WormBase Tree Display for Variation: WBVar00097666
expand all nodes | collapse all nodes | view schema
| WBVar00097666 | Name | Public_name | WBVar00097666 | ||
|---|---|---|---|---|---|
| Other_name | pas2525 | ||||
| cewivar00073355 | |||||
| F21A9.1b.1:c.166+114A>T | |||||
| F21A9.1a.2:c.-372+114A>T | |||||
| F21A9.1a.1:c.-372+114A>T | |||||
| HGVSg | CHROMOSOME_I:g.3711480A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | F21A9 | |
| Flanking_sequences | tattcctcataatcagaaagacactttgaatttttttaaaaatgaactccaaaaaatatagaaaccttccaggaatcagcactagaaagcagttttccactaaaagtccttccgttgaaattcggggaaaatccaaaaaatcatgaaagagtgtactactccgaggagagtgtgatcaatatttttagtaagtttgaggtcctaccacgaagttttttaaatgtttaatttacgtaattcaaccatttgagatcattttgtaaaattgacatcccaataaaagaatgttccaataaatta | aaaaaaaacaaattacagttatatttggtcactatacaaaattcgaattgagtaaccgaatatagccgtaattttttgaaaaagggcaaggtaaaatttttaatattttcactagttcgattttacagaagtttcagtcaaaattatggcaaattgccaaatttagaaaaattgaaattttatagaaacattcttgcaggtttgaatctatagaggttcataatattctagctttcgtttgttttaattcaatttttttgaaaattcattttcccaccattgaagttttttaaaagcatt | |||
| Mapping_target | F21A9 | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00017650 | |||
| Transcript | F21A9.1a.2 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F21A9.1a.2:c.-372+114A>T | ||||
| Intron_number | 2/7 | ||||
| F21A9.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F21A9.1a.1:c.-372+114A>T | ||||
| Intron_number | 1/6 | ||||
| F21A9.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F21A9.1b.1:c.166+114A>T | ||||
| Intron_number | 2/5 | ||||
| Method | WGS_Pasadena_Quinlan |
