WormBase Tree Display for Variation: WBVar00096141
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| WBVar00096141 | Evidence | Paper_evidence | WBPaper00040707 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00096141 | |||
| Other_name | pas1000 | ||||
| cewivar00068344 | |||||
| CE49517:p.Ile148= | |||||
| K12C11.1b.1:c.444T>C | |||||
| CE26819:p.Ile416= | |||||
| K12C11.1a.1:c.1248T>C | |||||
| HGVSg | CHROMOSOME_I:g.1341604A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | K12C11 | |
| Flanking_sequences | cacagtaatagtagtaggaatgatgataaattagaatcagtagacaaaaaatcacttggacaagaaatcagagacacgagattcgatgaccttctccgtccattcgcctccactagccatgaagttctcgatctcctcgacggttcgtggaagatcgctcagattctcgttaccagaagcacgaatgatgacgtcatcctcgatacggacgccgcctgatccgcggtacttgtcgatttcggatttgacgaggaattcgctctttttcgggtcggcgagcgcctcgttgagcaggaaatc | atgaaatagcagccgggttcgatggtgattgcctggaagatatcgatttttacgtgaaaattcggaaaaattgaggttttctggattttccagctccgcggggctaatttttctacttttcgataaaatttcggcattttgcatgctttaacagctcaaaactcaaaaaattatcgatttttccgaaaaatttactcccgtgggacagttttgactgaaaaagtcagcttttccacaatttttacggttgcagagctctgccgcctcgattttcacgaaaattatcgatatttccgaaaa | |||
| Mapping_target | K12C11 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (108) | |||||
| Laboratory | QX | ||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01430143 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00019673 | |||
| Transcript | K12C11.1a.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | K12C11.1a.1:c.1248T>C | ||||
| HGVSp | CE26819:p.Ile416= | ||||
| cDNA_position | 1248 | ||||
| CDS_position | 1248 | ||||
| Protein_position | 416 | ||||
| Exon_number | 3/4 | ||||
| Codon_change | atT/atC | ||||
| Amino_acid_change | I | ||||
| K12C11.1b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | K12C11.1b.1:c.444T>C | ||||
| HGVSp | CE49517:p.Ile148= | ||||
| cDNA_position | 444 | ||||
| CDS_position | 444 | ||||
| Protein_position | 148 | ||||
| Exon_number | 2/2 | ||||
| Codon_change | atT/atC | ||||
| Amino_acid_change | I | ||||
| Reference | WBPaper00040707 | ||||
| Method | WGS_Pasadena_Quinlan |
