WormBase Tree Display for Variation: WBVar00094186
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| WBVar00094186 | Name | Public_name | ok3108 | ||
|---|---|---|---|---|---|
| Other_name | CE04760:p.Arg303_Lys427del | ||||
| M02D8.4.1:c.906_1280del | |||||
| HGVSg | CHROMOSOME_X:g.8749081_8749455del | ||||
| Sequence_details | SMap | S_parent | Sequence | M02D8 | |
| Flanking_sequences | tccgtgttgaaagctgatcggagaacaaac | aggttcttgataccttccttaaaacatatt | |||
| Mapping_target | M02D8 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok3108_external | ||||
| ok3108_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00032964 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00019730 | |||
| Transcript | M02D8.4.1 | VEP_consequence | inframe_deletion | ||
| VEP_impact | MODERATE | ||||
| HGVSc | M02D8.4.1:c.906_1280del | ||||
| HGVSp | CE04760:p.Arg303_Lys427del | ||||
| cDNA_position | 985-1359 | ||||
| CDS_position | 906-1280 | ||||
| Protein_position | 302-427 | ||||
| Exon_number | 7/9 | ||||
| Codon_change | ctGCGTAAGCTTATTTGGCATCTTGAGTCTTATGATGTCACATCCATTCGTGCTTCTACTCCAATGTACTTCCTCTCCGAAGAAATCAGGAAATTGGGAATCAAAGTTGTTCTTTCTGGAGAAGGAGCTGATGAAATCTTCGGTGGATATCTCTACTTCCACAATGCCCCATCCGATGAGGACTTTCAAAAGGAAACCATCGATCGTGTTCTTCATCTCTACACATCTGATTGTCTTCGTGCTGACAAGTCTTCGATGGCTCACTCAGTCGAAGTTCGTGTTCCATTCCTGGATAAAGCATTTGTTGAGGCTGCAGTCAGTTTGGACCCTGCATTTAAGCGCCCACAAAAACTTGAAGATGGGAGAAACTGCGAGAAg/ctg | ||||
| Amino_acid_change | LRKLIWHLESYDVTSIRASTPMYFLSEEIRKLGIKVVLSGEGADEIFGGYLYFHNAPSDEDFQKETIDRVLHLYTSDCLRADKSSMAHSVEVRVPFLDKAFVEAAVSLDPAFKRPQKLEDGRNCEK/L | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
