WormBase Tree Display for Variation: WBVar00093992

WBVar00093992 Name: Public_name: ok2900
    Other_name: Y71D11A.3b.1:c.417+4388_417+5096del
      Y71D11A.5.1:c.866-23_1086del
      Y71D11A.3a.1:c.417+4388_417+5096del
    HGVSg: CHROMOSOME_III:g.1127166_1127874del
  Sequence_details: SMap: S_parent: Sequence: Y71D11A
    Flanking_sequences: tggttggagacattttgcgcttgttggctc tggaaaaaaaatcgggaaaatttttttttg
    Mapping_target: Y71D11A
    Type_of_mutation: Deletion
    PCR_product: ok2900_external
      ok2900_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00032837
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00022106
      WBGene00022104
    Transcript: Y71D11A.3b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y71D11A.3b.1:c.417+4388_417+5096del
        Intron_number: 5/9
      Y71D11A.3a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y71D11A.3a.1:c.417+4388_417+5096del
        Intron_number: 6/9
      Y71D11A.5.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y71D11A.5.1:c.866-23_1086del
        cDNA_position: ?-1144
        CDS_position: ?-1086
        Protein_position: ?-362
        Intron_number: 9-10/13
        Exon_number: 10-11/14
  Isolation: Mutagen: EMS
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele