WormBase Tree Display for Variation: WBVar00093678

WBVar00093678 Name: Public_name: ok2547
    Other_name: T20H4.2.1:c.-15_646del
    HGVSg: CHROMOSOME_III:g.7241375_7242768del
  Sequence_details: SMap: S_parent: Sequence: T20H4
    Flanking_sequences: ggggaatgatggaaagaacatttacacttt atggggttagtaattcaccattcgaatcta
    Mapping_target: T20H4
    Type_of_mutation: Deletion
    PCR_product: ok2547_external
      ok2547_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00036957
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00020635
    Transcript: T20H4.2.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,start_lost,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T20H4.2.1:c.-15_646del
        cDNA_position: 11-671
        CDS_position: ?-646
        Protein_position: ?-216
        Intron_number: 2-5/7
        Exon_number: 1-6/8
  Isolation: Mutagen: EMS
  Description: Phenotype: WBPhenotype:0000297 Paper_evidence: WBPaper00050231
        Curator_confirmed: WBPerson35337
        EQ_annotations: Anatomy_term: WBbt:0006941 PATO:0000460 Paper_evidence: WBPaper00050231
                Curator_confirmed: WBPerson35337
      WBPhenotype:0001509 Paper_evidence: WBPaper00050231
        Curator_confirmed: WBPerson35337
        EQ_annotations: Anatomy_term: WBbt:0006941 PATO:0000460 Paper_evidence: WBPaper00050231
                Curator_confirmed: WBPerson35337
  Reference: WBPaper00050231
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele