WormBase Tree Display for Variation: WBVar00093311

WBVar00093311 Evidence: Paper_evidence: WBPaper00035502
  Name: Public_name: ok2133
    HGVSg: CHROMOSOME_III:g.7971278_7973270del
  Sequence_details: SMap: S_parent: Sequence: F54H12
    Flanking_sequences: aaccacggtaacggtctcgacacgacaagt cttttcaggagtgaaacacgaaggaatgat
    Mapping_target: F54H12
    Type_of_mutation: Deletion
    PCR_product: ok2133_external
      ok2133_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00036745
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00018846
      WBGene00018845
    Transcript: F54H12.5.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 2-3/5
        Exon_number: 1-3/6
      F54H12.6.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 117-?
        CDS_position: 1-?
        Protein_position: 1-?
        Intron_number: 2-3/4
        Exon_number: 2-5/5
  Isolation: Mutagen: EMS
  Description: Phenotype: WBPhenotype:0000011 Paper_evidence: WBPaper00035502
        Curator_confirmed: WBPerson2021
        Remark: F54H12.6(ok2133) mutants are resistant against PUGNAc treatment unlike wild type Paper_evidence: WBPaper00035502
            Curator_confirmed: WBPerson2021
  Reference: WBPaper00035502
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele