WormBase Tree Display for Variation: WBVar00092971
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| WBVar00092971 | Name | Public_name | ok1769 | ||
|---|---|---|---|---|---|
| Other_name | H09G03.2b.1:c.1012_1379-141delinsGTTGTAGTAGTTGTAGTCT | ||||
| H09G03.2a.1:c.895_1262-141delinsGTTGTAGTAGTTGTAGTCT | |||||
| H09G03.2c.1:c.895_1262-141delinsGTTGTAGTAGTTGTAGTCT | |||||
| HGVSg | CHROMOSOME_III:g.3204421_3205714delinsAGACTACAACTACTACAAC | ||||
| Sequence_details | SMap | S_parent | Sequence | H09G03 | |
| Flanking_sequences | acccataatggctaggttacgttcactttg | tgcgtcggagggggcgaaggagagccggaa | |||
| Mapping_target | H09G03 | ||||
| Type_of_mutation | Insertion | AGACTACAACTACTACAAC | |||
| Deletion | |||||
| PCR_product | ok1769_external | ||||
| ok1769_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00032198 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00001494 | |||
| Transcript | H09G03.2c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | H09G03.2c.1:c.895_1262-141delinsGTTGTAGTAGTTGTAGTCT | ||||
| cDNA_position | 895-? | ||||
| CDS_position | 895-? | ||||
| Protein_position | 299-? | ||||
| Intron_number | 6-7/9 | ||||
| Exon_number | 6-7/10 | ||||
| H09G03.2a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | H09G03.2a.1:c.895_1262-141delinsGTTGTAGTAGTTGTAGTCT | ||||
| cDNA_position | 907-? | ||||
| CDS_position | 895-? | ||||
| Protein_position | 299-? | ||||
| Intron_number | 7-8/12 | ||||
| Exon_number | 7-8/13 | ||||
| H09G03.2b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | H09G03.2b.1:c.1012_1379-141delinsGTTGTAGTAGTTGTAGTCT | ||||
| cDNA_position | 1019-? | ||||
| CDS_position | 1012-? | ||||
| Protein_position | 338-? | ||||
| Intron_number | 8-9/13 | ||||
| Exon_number | 8-9/14 | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
