WormBase Tree Display for Variation: WBVar00092839
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| WBVar00092839 | Name | Public_name | ok1631 | ||
|---|---|---|---|---|---|
| Other_name | K01A2.8d.1:c.93-659_324-37del | ||||
| K01A2.4a.2:c.*95+262_*96-1224del | |||||
| K01A2.8c.3:c.-636_177-37del | |||||
| K01A2.8c.2:c.-55-659_177-37del | |||||
| HGVSg | CHROMOSOME_II:g.309806_311102del | ||||
| Sequence_details | SMap | S_parent | Sequence | K01A2 | |
| Flanking_sequences | aatggtgaaaagttttatttggggtagcac | tcagattcccaaaaagaaaaataacagatg | |||
| Mapping_target | K01A2 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | OK1631_external | ||||
| OK1631_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00032129 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00305491 | |||
| WBGene00019279 | |||||
| WBGene00305493 | |||||
| WBGene00305490 | |||||
| WBGene00019282 | |||||
| WBGene00305492 | |||||
| Transcript | K01A2.19 | ||||
| K01A2.16 | |||||
| K01A2.8c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| Intron_number | 2-3/5 | ||||
| Exon_number | 1-3/6 | ||||
| K01A2.8a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| Intron_number | 2-4/6 | ||||
| Exon_number | 1-4/7 | ||||
| K01A2.8c.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | K01A2.8c.2:c.-55-659_177-37del | ||||
| Intron_number | 1-4/6 | ||||
| Exon_number | 2-4/7 | ||||
| K01A2.8c.3 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | K01A2.8c.3:c.-636_177-37del | ||||
| cDNA_position | 1074-? | ||||
| Intron_number | 1-4/6 | ||||
| Exon_number | 1-4/7 | ||||
| K01A2.17 | |||||
| K01A2.18 | |||||
| K01A2.8d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | K01A2.8d.1:c.93-659_324-37del | ||||
| Intron_number | 1-3/4 | ||||
| Exon_number | 2-3/5 | ||||
| K01A2.4a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | K01A2.4a.2:c.*95+262_*96-1224del | ||||
| Intron_number | 12/12 | ||||
| Isolation | Mutagen | EMS | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
