WormBase Tree Display for Variation: WBVar00092210
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| WBVar00092210 | Name | Public_name | ok939 | ||
|---|---|---|---|---|---|
| Other_name | F18A1.2a.1:c.111_1101-18del | ||||
| F18A1.2d.1:c.267_1257-18del | |||||
| F18A1.2b.1:c.111_1009-18del | |||||
| F18A1.2c.1:c.213_1203-18del | |||||
| HGVSg | CHROMOSOME_II:g.7682630_7683948del | ||||
| Sequence_details | SMap | S_parent | Sequence | F18A1 | |
| Flanking_sequences | attcgacaagtttgcagttgtaacagattt | caaattcttattttcagtaccgacgagatg | |||
| Mapping_target | F18A1 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok939_external | ||||
| ok939_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00035961 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00003012 | |||
| Transcript | F18A1.2d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | F18A1.2d.1:c.267_1257-18del | ||||
| cDNA_position | 267-? | ||||
| CDS_position | 267-? | ||||
| Protein_position | 89-? | ||||
| Intron_number | 3-4/4 | ||||
| Exon_number | 3-4/5 | ||||
| F18A1.2b.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | F18A1.2b.1:c.111_1009-18del | ||||
| cDNA_position | 183-? | ||||
| CDS_position | 111-? | ||||
| Protein_position | 37-? | ||||
| Intron_number | 3/4 | ||||
| Exon_number | 3/5 | ||||
| F18A1.2a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | F18A1.2a.1:c.111_1101-18del | ||||
| cDNA_position | 111-? | ||||
| CDS_position | 111-? | ||||
| Protein_position | 37-? | ||||
| Intron_number | 2-3/4 | ||||
| Exon_number | 2-3/5 | ||||
| F18A1.2c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | F18A1.2c.1:c.213_1203-18del | ||||
| cDNA_position | 213-? | ||||
| CDS_position | 213-? | ||||
| Protein_position | 71-? | ||||
| Intron_number | 3-4/4 | ||||
| Exon_number | 3-4/5 | ||||
| Interactor | WBInteraction000503776 | ||||
| WBInteraction000503777 | |||||
| WBInteraction000503778 | |||||
| Isolation | Mutagen | UV/TMP | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
