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WormBase Tree Display for Variation: WBVar00092200

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Name Class

WBVar00092200NamePublic_nameok929
Other_nameY48C3A.14c.1:c.1037+328_1512delinsTGCCAAAACTGCAAAAAACATCTTTCTATGATAATCTAGAGTCATTGTTAACCTTCATCGTTGAAAGACAAAACCAAAAATCTAAATAGAGACCAATTTTCTGAGCTTTTCCCACCTTGATCCTTCCGTCTGCCGCAAGTATTAAAAGATCGTGAACATATATCCGTGCACAATGCACTCTCAAAAAGTTGTCACCTTTTCCACCAGTTTTTCACCCTTTCACCCCATCAATATAAATATTTGCAAATTATCTATCTCTTTCTCCAAAGTTTGTTAGTAGCACCCTACAAATATAACTGAACTTTTCCGGTTTCCGCCTGCCATCGTAACCTATTTTCATCACCTCCCACCATCAATATTTGCTCAATAACTTCCATACATTTTTTTTCGGTCTTTTCCAGTCTTTTTTTCATTTCAACCTATTCACTTCTTCTGCTTTTTCCAACCCCTTCCGTTTATTGACTATAAGTTTTGTTGTGTTATTCAAGCATATTTCATTTTGCAATAACTGTTTACTCATCGAAAAACTATTTTCCCCTATTTGTTTTTTCAACATCTCTTCCTCTTTAATTCGTTGTTTTTCCGCATCGTTTCCTTTTTTAGACGTGTTATTTGTTATCATAAACCCATCCGGAAAATGTAGTATAATAAAATAAAAAGGTAAATAAATAATCTCTATTTCTCTCTCCTTCGAAAAATTTCAAAATCGACACATAGGCTAGGAGGCTCCGCCTATTTTATTTGCTCTGACCACCCTCTCCAACCCACGTTTGATTATATATATAAATTGCACAAATTCTTTAAAACCTTCACGACAAGACTCTATTTCTTGATCCTCTATTATTTCTCGCAATTTTGTTGGTTTCAGACGAACCAATAATCGAAACGAACCGACCTTAAAATCAGAAGAATCATGTGGTGGTTCGGTGGAAATCCGAGTCCTTCTGACTATCCAAATGCTGCTATTCCTAATTTTAATATGCACGCTTTTGTGGTAAGTATTTAACTTTTTTTTTCCTTAGGTTAATGTGAGCCAACTCCTTTAATTTCTAGCTTCTATTGTTAATGTTAGGAGTAGTTACCGTACTTCCACAATGAGGATTGCACATGCTTCTTCAAGAGGAAATATCTCAGTTCATTTTAGTTATTAGT
Y48C3A.14a.1:c.1445+328_1920delinsTGCCAAAACTGCAAAAAACATCTTTCTATGATAATCTAGAGTCATTGTTAACCTTCATCGTTGAAAGACAAAACCAAAAATCTAAATAGAGACCAATTTTCTGAGCTTTTCCCACCTTGATCCTTCCGTCTGCCGCAAGTATTAAAAGATCGTGAACATATATCCGTGCACAATGCACTCTCAAAAAGTTGTCACCTTTTCCACCAGTTTTTCACCCTTTCACCCCATCAATATAAATATTTGCAAATTATCTATCTCTTTCTCCAAAGTTTGTTAGTAGCACCCTACAAATATAACTGAACTTTTCCGGTTTCCGCCTGCCATCGTAACCTATTTTCATCACCTCCCACCATCAATATTTGCTCAATAACTTCCATACATTTTTTTTCGGTCTTTTCCAGTCTTTTTTTCATTTCAACCTATTCACTTCTTCTGCTTTTTCCAACCCCTTCCGTTTATTGACTATAAGTTTTGTTGTGTTATTCAAGCATATTTCATTTTGCAATAACTGTTTACTCATCGAAAAACTATTTTCCCCTATTTGTTTTTTCAACATCTCTTCCTCTTTAATTCGTTGTTTTTCCGCATCGTTTCCTTTTTTAGACGTGTTATTTGTTATCATAAACCCATCCGGAAAATGTAGTATAATAAAATAAAAAGGTAAATAAATAATCTCTATTTCTCTCTCCTTCGAAAAATTTCAAAATCGACACATAGGCTAGGAGGCTCCGCCTATTTTATTTGCTCTGACCACCCTCTCCAACCCACGTTTGATTATATATATAAATTGCACAAATTCTTTAAAACCTTCACGACAAGACTCTATTTCTTGATCCTCTATTATTTCTCGCAATTTTGTTGGTTTCAGACGAACCAATAATCGAAACGAACCGACCTTAAAATCAGAAGAATCATGTGGTGGTTCGGTGGAAATCCGAGTCCTTCTGACTATCCAAATGCTGCTATTCCTAATTTTAATATGCACGCTTTTGTGGTAAGTATTTAACTTTTTTTTTCCTTAGGTTAATGTGAGCCAACTCCTTTAATTTCTAGCTTCTATTGTTAATGTTAGGAGTAGTTACCGTACTTCCACAATGAGGATTGCACATGCTTCTTCAAGAGGAAATATCTCAGTTCATTTTAGTTATTAGT
HGVSgCHROMOSOME_II:g.13395003_13397277delinsTGCCAAAACTGCAAAAAACATCTTTCTATGATAATCTAGAGTCATTGTTAACCTTCATCGTTGAAAGACAAAACCAAAAATCTAAATAGAGACCAATTTTCTGAGCTTTTCCCACCTTGATCCTTCCGTCTGCCGCAAGTATTAAAAGATCGTGAACATATATCCGTGCACAATGCACTCTCAAAAAGTTGTCACCTTTTCCACCAGTTTTTCACCCTTTCACCCCATCAATATAAATATTTGCAAATTATCTATCTCTTTCTCCAAAGTTTGTTAGTAGCACCCTACAAATATAACTGAACTTTTCCGGTTTCCGCCTGCCATCGTAACCTATTTTCATCACCTCCCACCATCAATATTTGCTCAATAACTTCCATACATTTTTTTTCGGTCTTTTCCAGTCTTTTTTTCATTTCAACCTATTCACTTCTTCTGCTTTTTCCAACCCCTTCCGTTTATTGACTATAAGTTTTGTTGTGTTATTCAAGCATATTTCATTTTGCAATAACTGTTTACTCATCGAAAAACTATTTTCCCCTATTTGTTTTTTCAACATCTCTTCCTCTTTAATTCGTTGTTTTTCCGCATCGTTTCCTTTTTTAGACGTGTTATTTGTTATCATAAACCCATCCGGAAAATGTAGTATAATAAAATAAAAAGGTAAATAAATAATCTCTATTTCTCTCTCCTTCGAAAAATTTCAAAATCGACACATAGGCTAGGAGGCTCCGCCTATTTTATTTGCTCTGACCACCCTCTCCAACCCACGTTTGATTATATATATAAATTGCACAAATTCTTTAAAACCTTCACGACAAGACTCTATTTCTTGATCCTCTATTATTTCTCGCAATTTTGTTGGTTTCAGACGAACCAATAATCGAAACGAACCGACCTTAAAATCAGAAGAATCATGTGGTGGTTCGGTGGAAATCCGAGTCCTTCTGACTATCCAAATGCTGCTATTCCTAATTTTAATATGCACGCTTTTGTGGTAAGTATTTAACTTTTTTTTTCCTTAGGTTAATGTGAGCCAACTCCTTTAATTTCTAGCTTCTATTGTTAATGTTAGGAGTAGTTACCGTACTTCCACAATGAGGATTGCACATGCTTCTTCAAGAGGAAATATCTCAGTTCATTTTAGTTATTAGT
Sequence_detailsSMapS_parentSequenceY48C3A
Flanking_sequencesgaaattttatatttcgcaatttgtcgatttccgcaacgactctactgtccgacgtgtcag
Mapping_targetY48C3A
Type_of_mutationInsertionTGCCAAAACTGCAAAAAACATCTTTCTATGATAATCTAGAGTCATTGTTAACCTTCATCGTTGAAAGACAAAACCAAAAATCTAAATAGAGACCAATTTTCTGAGCTTTTCCCACCTTGATCCTTCCGTCTGCCGCAAGTATTAAAAGATCGTGAACATATATCCGTGCACAATGCACTCTCAAAAAGTTGTCACCTTTTCCACCAGTTTTTCACCCTTTCACCCCATCAATATAAATATTTGCAAATTATCTATCTCTTTCTCCAAAGTTTGTTAGTAGCACCCTACAAATATAACTGAACTTTTCCGGTTTCCGCCTGCCATCGTAACCTATTTTCATCACCTCCCACCATCAATATTTGCTCAATAACTTCCATACATTTTTTTTCGGTCTTTTCCAGTCTTTTTTTCATTTCAACCTATTCACTTCTTCTGCTTTTTCCAACCCCTTCCGTTTATTGACTATAAGTTTTGTTGTGTTATTCAAGCATATTTCATTTTGCAATAACTGTTTACTCATCGAAAAACTATTTTCCCCTATTTGTTTTTTCAACATCTCTTCCTCTTTAATTCGTTGTTTTTCCGCATCGTTTCCTTTTTTAGACGTGTTATTTGTTATCATAAACCCATCCGGAAAATGTAGTATAATAAAATAAAAAGGTAAATAAATAATCTCTATTTCTCTCTCCTTCGAAAAATTTCAAAATCGACACATAGGCTAGGAGGCTCCGCCTATTTTATTTGCTCTGACCACCCTCTCCAACCCACGTTTGATTATATATATAAATTGCACAAATTCTTTAAAACCTTCACGACAAGACTCTATTTCTTGATCCTCTATTATTTCTCGCAATTTTGTTGGTTTCAGACGAACCAATAATCGAAACGAACCGACCTTAAAATCAGAAGAATCATGTGGTGGTTCGGTGGAAATCCGAGTCCTTCTGACTATCCAAATGCTGCTATTCCTAATTTTAATATGCACGCTTTTGTGGTAAGTATTTAACTTTTTTTTTCCTTAGGTTAATGTGAGCCAACTCCTTTAATTTCTAGCTTCTATTGTTAATGTTAGGAGTAGTTACCGTACTTCCACAATGAGGATTGCACATGCTTCTTCAAGAGGAAATATCTCAGTTCATTTTAGTTATTAGT
Deletion
PCR_productok929_external
ok929_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00031718
LaboratoryRB
PersonWBPerson46
KO_consortium_allele
StatusLive
AffectsGeneWBGene00012995
TranscriptY48C3A.14b.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
VEP_impactHIGH
cDNA_position?-405
CDS_position?-405
Protein_position?-135
Intron_number1/4
Exon_number1-2/5
Y48C3A.14a.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScY48C3A.14a.1:c.1445+328_1920delinsTGCCAAAACTGCAAAAAACATCTTTCTATGATAATCTAGAGTCATTGTTAACCTTCATCGTTGAAAGACAAAACCAAAAATCTAAATAGAGACCAATTTTCTGAGCTTTTCCCACCTTGATCCTTCCGTCTGCCGCAAGTATTAAAAGATCGTGAACATATATCCGTGCACAATGCACTCTCAAAAAGTTGTCACCTTTTCCACCAGTTTTTCACCCTTTCACCCCATCAATATAAATATTTGCAAATTATCTATCTCTTTCTCCAAAGTTTGTTAGTAGCACCCTACAAATATAACTGAACTTTTCCGGTTTCCGCCTGCCATCGTAACCTATTTTCATCACCTCCCACCATCAATATTTGCTCAATAACTTCCATACATTTTTTTTCGGTCTTTTCCAGTCTTTTTTTCATTTCAACCTATTCACTTCTTCTGCTTTTTCCAACCCCTTCCGTTTATTGACTATAAGTTTTGTTGTGTTATTCAAGCATATTTCATTTTGCAATAACTGTTTACTCATCGAAAAACTATTTTCCCCTATTTGTTTTTTCAACATCTCTTCCTCTTTAATTCGTTGTTTTTCCGCATCGTTTCCTTTTTTAGACGTGTTATTTGTTATCATAAACCCATCCGGAAAATGTAGTATAATAAAATAAAAAGGTAAATAAATAATCTCTATTTCTCTCTCCTTCGAAAAATTTCAAAATCGACACATAGGCTAGGAGGCTCCGCCTATTTTATTTGCTCTGACCACCCTCTCCAACCCACGTTTGATTATATATATAAATTGCACAAATTCTTTAAAACCTTCACGACAAGACTCTATTTCTTGATCCTCTATTATTTCTCGCAATTTTGTTGGTTTCAGACGAACCAATAATCGAAACGAACCGACCTTAAAATCAGAAGAATCATGTGGTGGTTCGGTGGAAATCCGAGTCCTTCTGACTATCCAAATGCTGCTATTCCTAATTTTAATATGCACGCTTTTGTGGTAAGTATTTAACTTTTTTTTTCCTTAGGTTAATGTGAGCCAACTCCTTTAATTTCTAGCTTCTATTGTTAATGTTAGGAGTAGTTACCGTACTTCCACAATGAGGATTGCACATGCTTCTTCAAGAGGAAATATCTCAGTTCATTTTAGTTATTAGT
cDNA_position?-1920
CDS_position?-1920
Protein_position?-640
Intron_number5-6/10
Exon_number6-7/11
Y48C3A.14c.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
VEP_impactHIGH
HGVScY48C3A.14c.1:c.1037+328_1512delinsTGCCAAAACTGCAAAAAACATCTTTCTATGATAATCTAGAGTCATTGTTAACCTTCATCGTTGAAAGACAAAACCAAAAATCTAAATAGAGACCAATTTTCTGAGCTTTTCCCACCTTGATCCTTCCGTCTGCCGCAAGTATTAAAAGATCGTGAACATATATCCGTGCACAATGCACTCTCAAAAAGTTGTCACCTTTTCCACCAGTTTTTCACCCTTTCACCCCATCAATATAAATATTTGCAAATTATCTATCTCTTTCTCCAAAGTTTGTTAGTAGCACCCTACAAATATAACTGAACTTTTCCGGTTTCCGCCTGCCATCGTAACCTATTTTCATCACCTCCCACCATCAATATTTGCTCAATAACTTCCATACATTTTTTTTCGGTCTTTTCCAGTCTTTTTTTCATTTCAACCTATTCACTTCTTCTGCTTTTTCCAACCCCTTCCGTTTATTGACTATAAGTTTTGTTGTGTTATTCAAGCATATTTCATTTTGCAATAACTGTTTACTCATCGAAAAACTATTTTCCCCTATTTGTTTTTTCAACATCTCTTCCTCTTTAATTCGTTGTTTTTCCGCATCGTTTCCTTTTTTAGACGTGTTATTTGTTATCATAAACCCATCCGGAAAATGTAGTATAATAAAATAAAAAGGTAAATAAATAATCTCTATTTCTCTCTCCTTCGAAAAATTTCAAAATCGACACATAGGCTAGGAGGCTCCGCCTATTTTATTTGCTCTGACCACCCTCTCCAACCCACGTTTGATTATATATATAAATTGCACAAATTCTTTAAAACCTTCACGACAAGACTCTATTTCTTGATCCTCTATTATTTCTCGCAATTTTGTTGGTTTCAGACGAACCAATAATCGAAACGAACCGACCTTAAAATCAGAAGAATCATGTGGTGGTTCGGTGGAAATCCGAGTCCTTCTGACTATCCAAATGCTGCTATTCCTAATTTTAATATGCACGCTTTTGTGGTAAGTATTTAACTTTTTTTTTCCTTAGGTTAATGTGAGCCAACTCCTTTAATTTCTAGCTTCTATTGTTAATGTTAGGAGTAGTTACCGTACTTCCACAATGAGGATTGCACATGCTTCTTCAAGAGGAAATATCTCAGTTCATTTTAGTTATTAGT
cDNA_position?-1512
CDS_position?-1512
Protein_position?-504
Intron_number3-4/7
Exon_number4-5/8
IsolationMutagenUV/TMP
RemarkSequenced by the C. elegans Gene Knockout ConsortiumPaper_evidenceWBPaper00041807
MethodKO_consortium_allele