WormBase Tree Display for Variation: WBVar00091946
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| WBVar00091946 | Name | Public_name | ok662 | ||
|---|---|---|---|---|---|
| Other_name | R09G11.2c.1:c.811-358_1066+51del | ||||
| R09G11.2a.1:c.826-358_1081+51del | |||||
| R09G11.2c.2:c.811-358_1066+51del | |||||
| R09G11.2a.2:c.826-358_1081+51del | |||||
| R09G11.2a.3:c.826-358_1081+51del | |||||
| HGVSg | CHROMOSOME_X:g.17525947_17526659del | ||||
| Sequence_details | SMap | S_parent | Sequence | R09G11 | |
| Flanking_sequences | gaatgcggcgctatatttattccccaccct | cgtacccagaaatctggcgaggggcgtaga | |||
| Mapping_target | R09G11 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | OK662_external | ||||
| OK662_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00035870 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00003600 | |||
| Transcript | R09G11.2c.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | R09G11.2c.2:c.811-358_1066+51del | ||||
| Intron_number | 9-11/13 | ||||
| Exon_number | 10-11/14 | ||||
| R09G11.2a.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | R09G11.2a.2:c.826-358_1081+51del | ||||
| Intron_number | 10-12/14 | ||||
| Exon_number | 11-12/15 | ||||
| R09G11.2c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | R09G11.2c.1:c.811-358_1066+51del | ||||
| Intron_number | 8-10/12 | ||||
| Exon_number | 9-10/13 | ||||
| R09G11.2a.3 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | R09G11.2a.3:c.826-358_1081+51del | ||||
| Intron_number | 9-11/13 | ||||
| Exon_number | 10-11/14 | ||||
| R09G11.2a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | R09G11.2a.1:c.826-358_1081+51del | ||||
| Intron_number | 8-10/12 | ||||
| Exon_number | 9-10/13 | ||||
| Isolation | Mutagen | UV/TMP | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
