WormBase Tree Display for Variation: WBVar00091705

WBVar00091705 Evidence: Paper_evidence: WBPaper00032335
  Name: Public_name: ok411
    Other_name: W01C8.6.1:c.956_1154+114del
      W01C8.6.2:c.956_1154+114del
    HGVSg: CHROMOSOME_X:g.5707109_5707537del
  Sequence_details: SMap: S_parent: Sequence: W01C8
    Flanking_sequences: tttgaaaaaaaaaacatgtcaatataacgt ccttagccagttgtttgatgcttgaacctt
    Mapping_target: W01C8
    Type_of_mutation: Deletion
    PCR_product: OK411_external
      OK411_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00031419
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00000295
    Transcript: W01C8.6.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: W01C8.6.1:c.956_1154+114del
        cDNA_position: 996-?
        CDS_position: 956-?
        Protein_position: 319-?
        Intron_number: 8-9/12
        Exon_number: 8-9/13
      W01C8.6.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: W01C8.6.2:c.956_1154+114del
        cDNA_position: 1055-?
        CDS_position: 956-?
        Protein_position: 319-?
        Intron_number: 9-10/13
        Exon_number: 9-10/14
  Description: Phenotype: WBPhenotype:0001444 Paper_evidence: WBPaper00032335
        Curator_confirmed: WBPerson712
        Remark: Animals exhibited defective gustatory plasticity of NaCl. Paper_evidence: WBPaper00032335
            Curator_confirmed: WBPerson712
        Affected_by: Molecule: WBMol:00003571 Paper_evidence: WBPaper00032335
              Curator_confirmed: WBPerson712
        Phenotype_assay: Treatment: Animals were tested for response to 25 mM NaCl after various pre-treatments: a 15-min wash in CTX buffer with or without 100 mM NaCl (liquid), or 30 min on a CTX plate with or without 100 mM NaCl, and in the presence or absence of bacteria, 500 mM glycerol, or 3 uL of benzaldehyde. Paper_evidence: WBPaper00032335
              Curator_confirmed: WBPerson712
  Reference: WBPaper00032335
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele