WormBase Tree Display for Variation: WBVar00091598

WBVar00091598 Evidence: Paper_evidence: WBPaper00037766
  Name: Public_name: ok300
    Other_name: F12F6.5a.1:c.1311+51_2435del
      F12F6.5d.1:c.1203+51_2327del
      F12F6.5b.1:c.1128+51_2252del
    HGVSg: CHROMOSOME_IV:g.11575807_11577212del
  Sequence_details: SMap: S_parent: Sequence: F12F6
    Flanking_sequences: ttttattactttgttttatatttcaaaaac atcaagtcgatcttcaaatcgatcaaaagc
    Mapping_target: F12F6
    Type_of_mutation: Deletion
    PCR_product: OK300_external
      OK300_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00031361
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00006406
    Transcript: F12F6.5b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F12F6.5b.1:c.1128+51_2252del
        cDNA_position: ?-2252
        CDS_position: ?-2252
        Protein_position: ?-751
        Intron_number: 1-2/4
        Exon_number: 2-3/5
      F12F6.5c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-1091
        CDS_position: ?-1091
        Protein_position: ?-364
        Intron_number: 1/3
        Exon_number: 1-2/4
      F12F6.5d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F12F6.5d.1:c.1203+51_2327del
        cDNA_position: ?-2630
        CDS_position: ?-2327
        Protein_position: ?-776
        Intron_number: 3-4/7
        Exon_number: 4-5/8
      F12F6.5a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F12F6.5a.1:c.1311+51_2435del
        cDNA_position: ?-2478
        CDS_position: ?-2435
        Protein_position: ?-812
        Intron_number: 3-4/7
        Exon_number: 4-5/8
    Interactor: WBInteraction000500303
  Isolation: Mutagen: UV/TMP
  Description: Phenotype: WBPhenotype:0000729 Paper_evidence: WBPaper00045004
        Curator_confirmed: WBPerson3744
    Phenotype_not_observed: WBPhenotype:0000749 Paper_evidence: WBPaper00037766
        Curator_confirmed: WBPerson712
      WBPhenotype:0001175 Paper_evidence: WBPaper00048917
        Curator_confirmed: WBPerson721
  Reference: WBPaper00037766
    WBPaper00045004
    WBPaper00048917
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele