WormBase Tree Display for Variation: WBVar00091436
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| WBVar00091436 | Name | Public_name | nx77 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Other_name | T25F10.5.1:c.309-38_875del | ||||||||
| HGVSg | CHROMOSOME_V:g.6763588_6764406del | ||||||||
| Sequence_details | SMap | S_parent | Sequence | T25F10 | |||||
| Flanking_sequences | ttgagatttttacacgagcatacaaaaata | tgttcaggaagcgctgggagagtacgacga | |||||||
| Mapping_target | T25F10 | ||||||||
| Type_of_mutation | Deletion | ||||||||
| SeqStatus | Sequenced | ||||||||
| Variation_type | Allele | ||||||||
| Origin | Species | Caenorhabditis elegans | |||||||
| Strain | WBStrain00027641 | ||||||||
| WBStrain00049022 | |||||||||
| Laboratory | MX | ||||||||
| Status | Live | ||||||||
| Affects | Gene | WBGene00000244 | |||||||
| Transcript | T25F10.5.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||||
| VEP_impact | HIGH | ||||||||
| HGVSc | T25F10.5.1:c.309-38_875del | ||||||||
| cDNA_position | ?-930 | ||||||||
| CDS_position | ?-875 | ||||||||
| Protein_position | ?-292 | ||||||||
| Intron_number | 3-6/10 | ||||||||
| Exon_number | 4-7/11 | ||||||||
| Interactor | WBInteraction000520984 | ||||||||
| WBInteraction000524549 | |||||||||
| WBInteraction000524550 | |||||||||
| WBInteraction000524551 | |||||||||
| Genetics | Interpolated_map_position | V | 0.146809 | ||||||
| Mapping_data | In_multi_point | 4923 | |||||||
| Description | Phenotype | WBPhenotype:0000436 | Paper_evidence | WBPaper00060242 | |||||
| Curator_confirmed | WBPerson291 | ||||||||
| WBPhenotype:0001780 | Paper_evidence | WBPaper00029060 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Remark | Mutants show defects in butanone enhancement | Paper_evidence | WBPaper00029060 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| EQ_annotations | Life_stage | WBls:0000057 | PATO:0000460 | Paper_evidence | WBPaper00029060 | ||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Phenotype_assay | Treatment | Preexposure to 1:10 dilution of butanone and food. Animals were then subjected to odorant chemotaxis assays and/or selection assays | Paper_evidence | WBPaper00029060 | |||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBPhenotype:0002053 | Paper_evidence | WBPaper00055368 | |||||||
| Curator_confirmed | WBPerson466 | ||||||||
| Remark | survive 10nM ivermectin | Paper_evidence | WBPaper00055368 | ||||||
| Curator_confirmed | WBPerson466 | ||||||||
| Affected_by | Molecule | WBMol:00002786 | Paper_evidence | WBPaper00055368 | |||||
| Curator_confirmed | WBPerson466 | ||||||||
| Disease_info | Models_disease | DOID:1935 | |||||||
| DOID:0060340 | |||||||||
| Models_disease_in_annotation | WBDOannot00000041 | ||||||||
| WBDOannot00000414 | |||||||||
| WBDOannot00000926 | |||||||||
| Reference | WBPaper00029016 | ||||||||
| WBPaper00029060 | |||||||||
| WBPaper00055368 | |||||||||
| WBPaper00060242 | |||||||||
| WBPaper00061932 | |||||||||
| Remark | This allele contains two deletions. One has flanking sequences of ttgagatttttacacgagcatacaaaaata and caagagctgtgagcagcacatctgcaagaa, the other has flanking sequences of gcctcggaacggtagcatattaaaaccttt and tgttcaggaagcgctgggagagtacgacga. | Paper_evidence | WBPaper00024240 | ||||||
| Method | Deletion_allele |
