WormBase Tree Display for Variation: WBVar00091270

WBVar00091270 Evidence: Paper_evidence: WBPaper00029073
  Name: Public_name: WBVar00091270
    Other_name: niDf249(X)
      F59F4.2.1:c.158-109_*121del
    HGVSg: CHROMOSOME_X:g.15841974_15842244del
  Sequence_details: SMap: S_parent: Sequence: F59F4
    Flanking_sequences: AGGATTTAGGCACATTTTTGGCATCAATTT ACCTTGTTCCCCCAATTCGCATCATGTTGA
    Mapping_target: F59F4
    CGH_deleted_probes: TCGCCTATTGCCTTCGCCTAGCTTATCGATAGATTTTAAGCATAAGCAAG TCCCATCGGAATCCCCCTTTCTCTTTTCGTTCCTTTCGTCCCCCAATTCA
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00022850
    Laboratory: VC
    Person: WBPerson427
    Detection_method: Oligo Array CGH
    Status: Live
  Affects: Gene: WBGene00010337
    Transcript: F59F4.2.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F59F4.2.1:c.158-109_*121del
        cDNA_position: ?-347
        Intron_number: 2/3
        Exon_number: 3-4/4
  Reference: WBPaper00029073
  Remark: Flanking sequences represent the nearest array oligo sequences present in the deletion chromsome on the basis of fluorescence ratio. These should not be considered hard breakpoints in the absence of actual sequence data. Original data available on-line at http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6294.
  Method: CGH_allele