WormBase Tree Display for Variation: WBVar00091219

WBVar00091219 Evidence: Paper_evidence: WBPaper00029073
  Name: Public_name: WBVar00091219
    Other_name: niDf198(IV)
    HGVSg: CHROMOSOME_IV:g.14547815_14550314del
  Sequence_details: SMap: S_parent: Sequence: T27E7
    Flanking_sequences: TAATTAACTTACCAAATCAAAAACTCTTGG CTATCTGAAATTACCAGTTTGTAAAATTTT
    Mapping_target: T27E7
    CGH_deleted_probes: ATATGTAAGTTGAGCTCTCACTGACACCTCTTCAGTATTCATGCTCACGA ATCATATAGTTGTTCAGCCTCAATTTTTGGATCTTTGCCATCGACCAGTT
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00022850
    Laboratory: VC
    Person: WBPerson427
    Detection_method: Oligo Array CGH
    Status: Live
  Affects: Gene: WBGene00013294
      WBGene00166559
      WBGene00168987
      WBGene00012093
      WBGene00048387
      WBGene00048535
    Transcript: Y57G11B.1.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 873-?
        CDS_position: 860-?
        Protein_position: 287-?
        Intron_number: 8/9
        Exon_number: 8-10/10
      T27E7.27
      T27E7.46
      T27E7.52
      T27E7.26
      T27E7.9.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-661
        CDS_position: ?-639
        Protein_position: ?-213
        Intron_number: 2-3/7
        Exon_number: 1-4/8
  Reference: WBPaper00029073
  Remark: Flanking sequences represent the nearest array oligo sequences present in the deletion chromsome on the basis of fluorescence ratio. These should not be considered hard breakpoints in the absence of actual sequence data. Original data available on-line at http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6294.
  Method: CGH_allele