WormBase Tree Display for Variation: WBVar00090890
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WBVar00090890 | Evidence | Paper_evidence | WBPaper00031335 | ||||||
---|---|---|---|---|---|---|---|---|---|
Name | Public_name | n4640 | |||||||
Other_name (2) | |||||||||
HGVSg | CHROMOSOME_IV:g.3232567_3233351del | ||||||||
Sequence_details | SMap | S_parent | Sequence | Y67D8A | |||||
Flanking_sequences | CCGGCCAAATCTAGAACTGC | ACCTCTGATAATACGGAACGG | |||||||
Mapping_target | Y67D8A | ||||||||
Type_of_mutation | Deletion | ||||||||
SeqStatus | Sequenced | ||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain | WBStrain00007202 | ||||||||
WBStrain00007203 | |||||||||
WBStrain00007204 | |||||||||
WBStrain00007205 | |||||||||
WBStrain00007209 | |||||||||
WBStrain00027508 | |||||||||
WBStrain00027525 | |||||||||
WBStrain00027592 | |||||||||
WBStrain00027593 | |||||||||
Laboratory | MT | ||||||||
Status | Live | ||||||||
Affects | Gene (3) | ||||||||
Transcript | Y67D8A.6 | VEP_consequence | transcript_ablation | ||||||
VEP_impact | HIGH | ||||||||
Exon_number | 1/1 | ||||||||
Y67D8A.4 | |||||||||
Y67D8A.2b.1 | VEP_consequence | intron_variant | |||||||
VEP_impact | MODIFIER | ||||||||
HGVSc | Y67D8A.2b.1:c.1623+964_1623+1748del | ||||||||
Intron_number | 9/21 | ||||||||
Y67D8A.2a.1 | VEP_consequence | intron_variant | |||||||
VEP_impact | MODIFIER | ||||||||
HGVSc | Y67D8A.2a.1:c.1623+964_1623+1748del | ||||||||
Intron_number | 9/20 | ||||||||
Interactor | WBInteraction000525170 | ||||||||
WBInteraction000534842 | |||||||||
WBInteraction000534843 | |||||||||
WBInteraction000534844 | |||||||||
WBInteraction000534845 | |||||||||
WBInteraction000534846 | |||||||||
WBInteraction000542495 | |||||||||
Isolation | Mutagen | EMS | Paper_evidence | WBPaper00031335 | |||||
Genetics | Interpolated_map_position | IV | -5.44319 | ||||||
Description | Phenotype | WBPhenotype:0001171 | Paper_evidence | WBPaper00054795 | |||||
Curator_confirmed | WBPerson143 | ||||||||
Phenotype_not_observed | WBPhenotype:0000006 | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | non-Egl | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0000207 | Paper_evidence | WBPaper00031335 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | Defecation cycle is normal | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0000545 | Paper_evidence | WBPaper00035664 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | Mutants do not lay late-stage embryos | Paper_evidence | WBPaper00035664 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0000634 | Paper_evidence | WBPaper00031335 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | Pumping is normal | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0000637 | Paper_evidence | WBPaper00031335 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | No defects in dauer formation | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0000643 | Paper_evidence | WBPaper00031335 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | non-Unc | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0001233 | Paper_evidence | WBPaper00031335 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | Cell number and nuclear staining is normal | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Phenotype_assay | Treatment | DAPI staining | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
WBPhenotype:0002535 | Paper_evidence | WBPaper00031335 | |||||||
Curator_confirmed | WBPerson2021 | ||||||||
Remark | non-Dyf | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
EQ_annotations | Anatomy_term | WBbt:0005666 | PATO:0000460 | Paper_evidence | WBPaper00031335 | ||||
Curator_confirmed | WBPerson2021 | ||||||||
WBbt:0005667 | PATO:0000460 | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBbt:0005668 | PATO:0000460 | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBbt:0005665 | PATO:0000460 | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBbt:0005661 | PATO:0000460 | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBbt:0007807 | PATO:0000460 | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
WBbt:0007808 | PATO:0000460 | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | ||||||||
Phenotype_assay | Treatment | DiO staining | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | ||||||||
Reference | WBPaper00031335 | ||||||||
WBPaper00035664 | |||||||||
WBPaper00054795 | |||||||||
Method | Deletion_allele |