WormBase Tree Display for Variation: WBVar00090890
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WBVar00090890 | Evidence | Paper_evidence | WBPaper00031335 | |||||
---|---|---|---|---|---|---|---|---|
Name | Public_name | n4640 | ||||||
Other_name (2) | ||||||||
HGVSg | CHROMOSOME_IV:g.3232567_3233351del | |||||||
Sequence_details | SMap | S_parent | Sequence | Y67D8A | ||||
Flanking_sequences | CCGGCCAAATCTAGAACTGC | ACCTCTGATAATACGGAACGG | ||||||
Mapping_target | Y67D8A | |||||||
Type_of_mutation | Deletion | |||||||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00007202 | |||||||
WBStrain00007203 | ||||||||
WBStrain00007204 | ||||||||
WBStrain00007205 | ||||||||
WBStrain00007209 | ||||||||
WBStrain00027508 | ||||||||
WBStrain00027525 | ||||||||
WBStrain00027592 | ||||||||
WBStrain00027593 | ||||||||
Laboratory | MT | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00196015 | ||||||
WBGene00022059 | ||||||||
WBGene00003286 | ||||||||
Transcript | Y67D8A.6 | VEP_consequence | transcript_ablation | |||||
VEP_impact | HIGH | |||||||
Exon_number | 1/1 | |||||||
Y67D8A.4 | ||||||||
Y67D8A.2b.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y67D8A.2b.1:c.1623+964_1623+1748del | |||||||
Intron_number | 9/21 | |||||||
Y67D8A.2a.1 | VEP_consequence | intron_variant | ||||||
VEP_impact | MODIFIER | |||||||
HGVSc | Y67D8A.2a.1:c.1623+964_1623+1748del | |||||||
Intron_number | 9/20 | |||||||
Interactor | WBInteraction000525170 | |||||||
WBInteraction000534842 | ||||||||
WBInteraction000534843 | ||||||||
WBInteraction000534844 | ||||||||
WBInteraction000534845 | ||||||||
WBInteraction000534846 | ||||||||
WBInteraction000542495 | ||||||||
Isolation | Mutagen | EMS | Paper_evidence | WBPaper00031335 | ||||
Genetics | Interpolated_map_position | IV | -5.44319 | |||||
Description | Phenotype | WBPhenotype:0001171 | Paper_evidence | WBPaper00054795 | ||||
Curator_confirmed | WBPerson143 | |||||||
Phenotype_not_observed | WBPhenotype:0000006 | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | non-Egl | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0000207 | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | Defecation cycle is normal | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0000545 | Paper_evidence | WBPaper00035664 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | Mutants do not lay late-stage embryos | Paper_evidence | WBPaper00035664 | |||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0000634 | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | Pumping is normal | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0000637 | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | No defects in dauer formation | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0000643 | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | non-Unc | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0001233 | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | Cell number and nuclear staining is normal | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Phenotype_assay | Treatment | DAPI staining | Paper_evidence | WBPaper00031335 | ||||
Curator_confirmed | WBPerson2021 | |||||||
WBPhenotype:0002535 | Paper_evidence | WBPaper00031335 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | non-Dyf | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00031335 | |||||
Curator_confirmed | WBPerson2021 | |||||||
EQ_annotations | Anatomy_term (7) | |||||||
Phenotype_assay | Treatment | DiO staining | Paper_evidence | WBPaper00031335 | ||||
Curator_confirmed | WBPerson2021 | |||||||
Reference | WBPaper00031335 | |||||||
WBPaper00035664 | ||||||||
WBPaper00054795 | ||||||||
Method | Deletion_allele |