WormBase Tree Display for Variation: WBVar00090248
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WBVar00090248 | Evidence | Paper_evidence | WBPaper00003109 | ||||
---|---|---|---|---|---|---|---|
Name | Public_name | n1773 | |||||
Other_name | CE31275:p.Pro482= | ||||||
CE49440:p.Pro473= | |||||||
AC7.2c.1:c.1665C>T | |||||||
CE49353:p.Pro555= | |||||||
CE25736:p.Pro483= | |||||||
AC7.2a.1:c.1449C>T | |||||||
AC7.2b.1:c.1446C>T | |||||||
AC7.2d.1:c.1419C>T | |||||||
HGVSg | CHROMOSOME_IV:g.5129037G>A | ||||||
Sequence_details | SMap | S_parent | Sequence | AC7 | |||
Flanking_sequences | attgggagagaacaatttgacagcgattcc | gaggaaattggtgagtttttggttcatatt | |||||
Mapping_target | AC7 | ||||||
Type_of_mutation | Substitution | C | T | Paper_evidence | WBPaper00003109 | ||
SeqStatus | Sequenced | ||||||
Variation_type | Allele | ||||||
Origin | Species | Caenorhabditis elegans | |||||
Laboratory | MT | ||||||
Status | Live | ||||||
Affects | Gene | WBGene00004929 | |||||
Transcript | AC7.2b.1 | VEP_consequence | synonymous_variant | ||||
VEP_impact | LOW | ||||||
HGVSc | AC7.2b.1:c.1446C>T | ||||||
HGVSp | CE31275:p.Pro482= | ||||||
cDNA_position | 1454 | ||||||
CDS_position | 1446 | ||||||
Protein_position | 482 | ||||||
Exon_number | 9/11 | ||||||
Codon_change | ccC/ccT | ||||||
Amino_acid_change | P | ||||||
AC7.2a.1 | VEP_consequence | synonymous_variant | |||||
VEP_impact | LOW | ||||||
HGVSc | AC7.2a.1:c.1449C>T | ||||||
HGVSp | CE25736:p.Pro483= | ||||||
cDNA_position | 1536 | ||||||
CDS_position | 1449 | ||||||
Protein_position | 483 | ||||||
Exon_number | 8/10 | ||||||
Codon_change | ccC/ccT | ||||||
Amino_acid_change | P | ||||||
AC7.2d.1 | VEP_consequence | synonymous_variant | |||||
VEP_impact | LOW | ||||||
HGVSc | AC7.2d.1:c.1419C>T | ||||||
HGVSp | CE49440:p.Pro473= | ||||||
cDNA_position | 1419 | ||||||
CDS_position | 1419 | ||||||
Protein_position | 473 | ||||||
Exon_number | 8/9 | ||||||
Codon_change | ccC/ccT | ||||||
Amino_acid_change | P | ||||||
AC7.2c.1 | VEP_consequence | synonymous_variant | |||||
VEP_impact | LOW | ||||||
HGVSc | AC7.2c.1:c.1665C>T | ||||||
HGVSp | CE49353:p.Pro555= | ||||||
cDNA_position | 1689 | ||||||
CDS_position | 1665 | ||||||
Protein_position | 555 | ||||||
Exon_number | 9/11 | ||||||
Codon_change | ccC/ccT | ||||||
Amino_acid_change | P | ||||||
Interactor | WBInteraction000500830 | ||||||
Isolation | Mutagen | EMS | Paper_evidence | WBPaper00003109 | |||
Forward_genetics | Suppressor of clr-1(e1745ts) | ||||||
Genetics | Interpolated_map_position | IV | 1.49278 | ||||
Description | Phenotype_not_observed | WBPhenotype:0000886 | Person_evidence | WBPerson516 | |||
Curator_confirmed | WBPerson712 | ||||||
Remark | No phenotypes have been associated with any soc-2 allele as a single mutant. | Person_evidence | WBPerson516 | ||||
Curator_confirmed | WBPerson712 | ||||||
Reference | WBPaper00003109 | ||||||
Method | Substitution_allele |