WormBase Tree Display for Variation: WBVar00090148
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WBVar00090148 | Name | Public_name | n1377 | ||||||
---|---|---|---|---|---|---|---|---|---|
Sequence_details (2) | |||||||||
Variation_type | Allele | ||||||||
Origin | Species | Caenorhabditis elegans | |||||||
Strain | WBStrain00027040 | ||||||||
WBStrain00030729 | |||||||||
WBStrain00030730 | |||||||||
WBStrain00030732 | |||||||||
Laboratory | MT | ||||||||
Status | Live | ||||||||
Affects | Gene | WBGene00001185 | |||||||
Interactor | WBInteraction000535557 | ||||||||
WBInteraction000556185 | |||||||||
Description | Phenotype | WBPhenotype:0000006 | Paper_evidence | WBPaper00006107 | |||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | SM chemoattraction can be rescued by expression of LET-756. | Paper_evidence | WBPaper00006107 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0000245 | Paper_evidence | WBPaper00006107 | |||||||
WBPaper00002741 | |||||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark (2) | |||||||||
WBPhenotype:0000640 | Paper_evidence | WBPaper00002741 | |||||||
Curator_confirmed | WBPerson712 | ||||||||
Remark | egl-17(n1377) is 83% penetrant for the Egl phenotype. | Paper_evidence | WBPaper00002741 | ||||||
Curator_confirmed | WBPerson712 | ||||||||
Penetrance | Incomplete | 83% | Paper_evidence | WBPaper00002741 | |||||
Curator_confirmed | WBPerson712 | ||||||||
WBPhenotype:0001645 | Paper_evidence | WBPaper00006119 | |||||||
Curator_confirmed | WBPerson1754 | ||||||||
Remark | n1377 and s2613 together, but not individually, block the protein degradation observed in clr-1(e1745) | Paper_evidence | WBPaper00006119 | ||||||
Curator_confirmed | WBPerson1754 | ||||||||
Phenotype_not_observed | WBPhenotype:0001645 | Paper_evidence | WBPaper00040284 | ||||||
Curator_confirmed | WBPerson2987 | ||||||||
Remark | Table S2 | Paper_evidence | WBPaper00040284 | ||||||
Curator_confirmed | WBPerson2987 | ||||||||
WBPhenotype:0002193 | Paper_evidence | WBPaper00044058 | |||||||
Curator_confirmed | WBPerson2987 | ||||||||
Remark | "No allele of egl-17, egl-15 or any other downstream FGF component other than sem-5 had any effect on orientation as single mutants (Table 1), which is probably due to the involvement of sem-5 in one of the other pathways controlling vulval orientation as well as its role in the FGF pathway." | Paper_evidence | WBPaper00044058 | ||||||
Curator_confirmed | WBPerson2987 | ||||||||
EQ_annotations | Anatomy_term | WBbt:0006895 | PATO:0000460 | Paper_evidence | WBPaper00044058 | ||||
Curator_confirmed | WBPerson2987 | ||||||||
Reference | WBPaper00040284 | ||||||||
WBPaper00006107 | |||||||||
WBPaper00002741 | |||||||||
WBPaper00006119 | |||||||||
WBPaper00010221 | |||||||||
WBPaper00044058 | |||||||||
Remark | This deletion removes 531bp towards the 5' end of egl-17. Exon 2 is completely removed along with nearly the whole of intron 2. The exact breakpoint are not published. | Paper_evidence | WBPaper00002741 | ||||||
Method | Deletion_allele |