WormBase Tree Display for Variation: WBVar00089736
expand all nodes | collapse all nodes | view schema
| WBVar00089736 | Evidence | Paper_evidence | WBPaper00032289 | ||
|---|---|---|---|---|---|
| Name | Public_name | n765 | |||
| Other_name | CE15381:p.Pro208LysfsTer16 | ||||
| ZK662.4.2:c.622_812del | |||||
| ZK662.4.1:c.622_812del | |||||
| HGVSg | CHROMOSOME_X:g.15727663_15727853del | ||||
| Sequence_details | SMap | S_parent | Sequence | ZK678 | |
| Flanking_sequences | TCAAATGTCAAGTTTACGAACATTGTGTGT | AAGGTAAATTTAGCGTTTTTAACCTTTATA | |||
| Mapping_target | ZK678 | ||||
| Type_of_mutation (2) | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (179) | |||||
| Laboratory | MT | ||||
| NM | |||||
| CX | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00003004 | |||
| WBGene00023498 | |||||
| WBGene00023497 | |||||
| Transcript | ZK662.4.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | ZK662.4.1:c.622_812del | ||||
| HGVSp | CE15381:p.Pro208LysfsTer16 | ||||
| cDNA_position | 628-818 | ||||
| CDS_position | 622-812 | ||||
| Protein_position | 208-271 | ||||
| Exon_number | 4/10 | ||||
| Codon_change | CCAAACGAAGAGATTTGCAAGCTGGTTGAAGAGAGTGCAGTTGTCAAACGATACAACGTTTGCTTCTACAACTACGTTACCCGTTTTGTGGCCGATTTGATGGAAATTGAAGAGTTTTCCAGTGGGCTGACACAATTGCGAACATTTGTTCGTTATATGAAACAAAATTCGGATATGTATAGCAAATTTAGa/a | ||||
| Amino_acid_change | PNEEICKLVEESAVVKRYNVCFYNYVTRFVADLMEIEEFSSGLTQLRTFVRYMKQNSDMYSKFR/X | ||||
| ZK662.4.2 | VEP_consequence | frameshift_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | ZK662.4.2:c.622_812del | ||||
| HGVSp | CE15381:p.Pro208LysfsTer16 | ||||
| cDNA_position | 634-824 | ||||
| CDS_position | 622-812 | ||||
| Protein_position | 208-271 | ||||
| Exon_number | 4/11 | ||||
| Codon_change | CCAAACGAAGAGATTTGCAAGCTGGTTGAAGAGAGTGCAGTTGTCAAACGATACAACGTTTGCTTCTACAACTACGTTACCCGTTTTGTGGCCGATTTGATGGAAATTGAAGAGTTTTCCAGTGGGCTGACACAATTGCGAACATTTGTTCGTTATATGAAACAAAATTCGGATATGTATAGCAAATTTAGa/a | ||||
| Amino_acid_change | PNEEICKLVEESAVVKRYNVCFYNYVTRFVADLMEIEEFSSGLTQLRTFVRYMKQNSDMYSKFR/X | ||||
| Interactor (64) | |||||
| Genetics | Interpolated_map_position | X | 22.945 | ||
| Mapping_data | In_2_point (3) | ||||
| In_multi_point (19) | |||||
| In_pos_neg_data | 4461 | ||||
| Description (2) | |||||
| Reference (26) | |||||
| Remark | Manually curated Gene associations preserved as a text remark so that VEP is the canonical predictor of consequence: WBGene00023498 WBGene00003004 Genomic_neighbourhood | ||||
| Method | Deletion_and_insertion_allele |
