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WormBase Tree Display for Variation: WBVar00089401

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Name Class

WBVar00089401EvidencePaper_evidenceWBPaper00004442
NamePublic_namen301
Other_nameK10G6.1.1:c.185G>A
CE12098:p.Arg62Gln
HGVSgCHROMOSOME_II:g.3983472G>A
Sequence_details (5)
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
Strain (15)
LaboratoryMT
StatusLive
AffectsGeneWBGene00003017
TranscriptK10G6.1.1 (12)
InteractorWBInteraction000052119
WBInteraction000500693
WBInteraction000500697
WBInteraction000501874
WBInteraction000524414
IsolationMutagenEMS
GeneticsInterpolated_map_positionII-5.88214
Mapping_dataIn_2_point783
784
In_multi_point (14)
In_pos_neg_data (13)
DescriptionPhenotypeWBPhenotype:0000006Paper_evidenceWBPaper00026863
Curator_confirmedWBPerson712
Remark21% of fertile animals (n=33) exhibited an egg laying defect.Paper_evidenceWBPaper00026863
Curator_confirmedWBPerson712
PenetranceIncompletePaper_evidenceWBPaper00026863
Curator_confirmedWBPerson712
Variation_effectProbable_null_via_phenotypePaper_evidenceWBPaper00026863
Curator_confirmedWBPerson712
Phenotype_assayTreatmentAll strains were grown at 20C.Paper_evidenceWBPaper00026863
Curator_confirmedWBPerson712
WBPhenotype:0000216Paper_evidenceWBPaper00035553
Curator_confirmedWBPerson625
Remarkdefect in Bγ cell fate specificationPaper_evidenceWBPaper00035553
Curator_confirmedWBPerson625
EQ_annotationsAnatomy_termWBbt:0007830PATO:0000460Paper_evidenceWBPaper00035553
Curator_confirmedWBPerson625
GO_termGO:0001708PATO:0000460Paper_evidenceWBPaper00035553
Curator_confirmedWBPerson625
Phenotype_assayControl_strainWBStrain00044748Paper_evidenceWBPaper00035553
Curator_confirmedWBPerson625
Treatmentceh-13::gfp as marker of Bγ cell fate syIs145 PS4807 contains the ceh-13::GFP integrated transgene syIs145 that was obtained by microinjection of pMF1 at 10 ng/μl, pBS at 20 ng/μl and unc-119(+) at 40 ng/μl into unc-119(ed4); him-5(e1490) mutant animals.Paper_evidenceWBPaper00035553
Curator_confirmedWBPerson625
GenotypesIys145 [ceh-13::GFP]Paper_evidenceWBPaper00035553
Curator_confirmedWBPerson625
WBPhenotype:0000218Paper_evidenceWBPaper00026707
WBPaper00005344
WBPaper00006388
Curator_confirmedWBPerson712
WBPerson2987
Remark4.3 (n=17)Paper_evidenceWBPaper00026707
Curator_confirmedWBPerson712
The lin-31(n301) mutation resulted in more than the expected number of induced vulval precursor cells (4.45 on average instead of 3.0 in wild type)Paper_evidenceWBPaper00005344
Curator_confirmedWBPerson2987
lin-31(n301) mutant animals exhibited an average of 3.81 induced vulval precursor cells (Table I), as opposed to 3.0 in wild typePaper_evidenceWBPaper00006388
Curator_confirmedWBPerson2987
Variation_effectNullPaper_evidenceWBPaper00005344
Curator_confirmedWBPerson2987
EQ_annotationsAnatomy_termWBbt:0007809PATO:0000460Paper_evidenceWBPaper00005344
WBPaper00006388
Curator_confirmedWBPerson2987
WBPhenotype:0000239Person_evidenceWBPerson261
Curator_confirmedWBPerson712
RemarkVPC cells adopt 1ary/2ary/3ary fate at random. Similar phenotype in n301/Df.Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Ease_of_scoringES3_Easy_to_scorePerson_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0000296Paper_evidenceWBPaper00003626
Curator_confirmedWBPerson37
WBPhenotype:0000640Paper_evidenceWBPaper00026707
Curator_confirmedWBPerson712
PenetranceIncomplete33% (n=212)Paper_evidenceWBPaper00026707
Curator_confirmedWBPerson712
WBPhenotype:0000698Paper_evidenceWBPaper00026863
WBPaper00005344
Curator_confirmedWBPerson712
WBPerson2987
Remark33% animals (n=21) are aberrant in induction of VPCs; <3 of the VPCs, which are induced in wild type animals (P5.p to P7.p), are induced in these animals, as scored by Nomarski optics.Paper_evidenceWBPaper00026863
Curator_confirmedWBPerson712
5% of lin-31(n301) animals are vulvalessPaper_evidenceWBPaper00005344
Curator_confirmedWBPerson2987
PenetranceLowPaper_evidenceWBPaper00005344
Curator_confirmedWBPerson2987
Variation_effectNullPaper_evidenceWBPaper00005344
Curator_confirmedWBPerson2987
Probable_null_via_phenotypePaper_evidenceWBPaper00026863
Curator_confirmedWBPerson712
EQ_annotationsAnatomy_termWBbt:0006748PATO:0000460Paper_evidenceWBPaper00005344
Curator_confirmedWBPerson2987
Phenotype_assayTreatmentAll strains were grown at 20C.Paper_evidenceWBPaper00026863
Curator_confirmedWBPerson712
WBPhenotype:0000700Paper_evidenceWBPaper00000762
WBPaper00026863
WBPaper00026707
WBPaper00005344
WBPaper00006388
Person_evidenceWBPerson261
Curator_confirmedWBPerson2021
WBPerson712
WBPerson2987
RemarkVulva is non-functional in some lin-31 hermaphrodites, which results in a bag of worms phenotypePaper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
86% animals display one or more ectopic pseudovulvae (n=314).Paper_evidenceWBPaper00026863
Curator_confirmedWBPerson712
Adult hermaphrodite Muv, vulva either functional or nonfunctional protrusion; 0-4 small ventral protrusions. Similar phenotype in n301/Df.Person_evidenceWBPerson261
Curator_confirmedWBPerson712
95% of lin-31(n301) animals have multiple vulvaPaper_evidenceWBPaper00005344
Curator_confirmedWBPerson2987
Table IPaper_evidenceWBPaper00006388
Curator_confirmedWBPerson2987
PenetranceIncomplete74% (n=472)Paper_evidenceWBPaper00026707
Curator_confirmedWBPerson712
HighPaper_evidenceWBPaper00005344
Curator_confirmedWBPerson2987
90% penetrantPaper_evidenceWBPaper00006388
Curator_confirmedWBPerson2987
RecessivePaper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
Variation_effectNullPaper_evidenceWBPaper00000762
WBPaper00005344
Curator_confirmedWBPerson2021
WBPerson2987
Probable_null_via_phenotypePaper_evidenceWBPaper00026863
Curator_confirmedWBPerson712
EQ_annotationsAnatomy_termWBbt:0006748PATO:0000460Paper_evidenceWBPaper00005344
WBPaper00006388
Curator_confirmedWBPerson2987
Life_stageWBls:0000057PATO:0000460Paper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
Phenotype_assayTreatmentAll strains were grown at 20C.Paper_evidenceWBPaper00026863
Curator_confirmedWBPerson712
WBPhenotype:0001278Paper_evidenceWBPaper00035553
Curator_confirmedWBPerson625
Remarkdecreased sIys145 expression in B&gamma;Paper_evidenceWBPaper00035553
Curator_confirmedWBPerson625
EQ_annotationsAnatomy_termWBbt:0007830PATO:0000460Paper_evidenceWBPaper00035553
Curator_confirmedWBPerson625
GO_termGO:0010467PATO:0000460Paper_evidenceWBPaper00035553
Curator_confirmedWBPerson625
Phenotype_assayControl_strainWBStrain00044748Paper_evidenceWBPaper00035553
Curator_confirmedWBPerson625
Treatmentceh-13::gfp as marker of B&gamma; cell fate syIs145 PS4807 contains the ceh-13::GFP integrated transgene syIs145 that was obtained by microinjection of pMF1 at 10 ng/&mu;l, pBS at 20 ng/&mu;l and unc-119(+) at 40 ng/&mu;l into unc-119(ed4); him-5(e1490) mutant animals.Paper_evidenceWBPaper00035553
Curator_confirmedWBPerson625
GenotypesIys145 [ceh-13::GFP]Paper_evidenceWBPaper00035553
Curator_confirmedWBPerson625
WBPhenotype:0001414Paper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
Remarkmale mating is completely abolishedPaper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
PenetranceHighPaper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
RecessivePaper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
Variation_effectNullPaper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
EQ_annotationsLife_stageWBls:0000056PATO:0000460Paper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
Phenotype_assayGenotypehim-5(e1467)Paper_evidenceWBPaper00000762
Curator_confirmedWBPerson2021
Phenotype_not_observed (7)
Reference (13)
MethodSubstitution_allele