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WormBase Tree Display for Variation: WBVar00086678

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Name Class

WBVar00086678EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00086678
Other_namesnp_K09E9[3]
haw111038
cewivar00277544
K09E9.1a.2:c.1390-212G>A
K09E9.1b.1:c.1420-212G>A
K09E9.1a.1:c.1390-212G>A
K09E9.1c.1:c.1198-212G>A
HGVSgCHROMOSOME_X:g.15625887G>A
Sequence_detailsSMapS_parentSequenceK09E9
Flanking_sequencestgaagttgctattaacatatgtattttcaaaaataataactgctccacat
Mapping_targetK09E9
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
WGS_Hawaiian_Waterston
Million_mutation_project_reanalysis
LaboratoryRW
PersonWBPerson1562
AnalysisWGS_Hawaiian_Waterston
Million_mutation_project_reanalysis
SNP_Wicks
HistoryAcquires_mergeWBVar00245574
StatusLive
AffectsGeneWBGene00010724
TranscriptK09E9.1a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScK09E9.1a.1:c.1390-212G>A
Intron_number10/12
K09E9.1c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScK09E9.1c.1:c.1198-212G>A
Intron_number7/8
K09E9.1b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScK09E9.1b.1:c.1420-212G>A
Intron_number9/10
K09E9.1a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScK09E9.1a.2:c.1390-212G>A
Intron_number9/11
ReferenceWBPaper00004703
Remark[20081124 db] this Variation was previously named hw111038
MethodWGS_Hawaiian_Waterston