WormBase Tree Display for Variation: WBVar00086678
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WBVar00086678 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00086678 | |||
Other_name | snp_K09E9[3] | ||||
haw111038 | |||||
cewivar00277544 | |||||
K09E9.1a.2:c.1390-212G>A | |||||
K09E9.1b.1:c.1420-212G>A | |||||
K09E9.1a.1:c.1390-212G>A | |||||
K09E9.1c.1:c.1198-212G>A | |||||
HGVSg | CHROMOSOME_X:g.15625887G>A | ||||
Sequence_details | SMap | S_parent | Sequence | K09E9 | |
Flanking_sequences | tgaagttgctattaacatatgtatt | ttcaaaaataataactgctccacat | |||
Mapping_target | K09E9 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WGS_Hawaiian_Waterston | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
SNP_Wicks | |||||
History | Acquires_merge | WBVar00245574 | |||
Status | Live | ||||
Affects | Gene | WBGene00010724 | |||
Transcript | K09E9.1a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | K09E9.1a.1:c.1390-212G>A | ||||
Intron_number | 10/12 | ||||
K09E9.1c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | K09E9.1c.1:c.1198-212G>A | ||||
Intron_number | 7/8 | ||||
K09E9.1b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | K09E9.1b.1:c.1420-212G>A | ||||
Intron_number | 9/10 | ||||
K09E9.1a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | K09E9.1a.2:c.1390-212G>A | ||||
Intron_number | 9/11 | ||||
Reference | WBPaper00004703 | ||||
Remark | [20081124 db] this Variation was previously named hw111038 | ||||
Method | WGS_Hawaiian_Waterston |