WormBase Tree Display for Variation: WBVar00085647
expand all nodes | collapse all nodes | view schema
WBVar00085647 | Name | Public_name | WBVar00085647 | ||
---|---|---|---|---|---|
Other_name | haw110007 | ||||
cewivar00277264 | |||||
T04C10.11.2:c.141+8C>T | |||||
T04C10.4.1:c.-115C>T | |||||
T04C10.11.1:c.141+8C>T | |||||
HGVSg | CHROMOSOME_X:g.14810656G>A | ||||
Sequence_details | SMap | S_parent | Sequence | T04C10 | |
Flanking_sequences | attattaatcaattaaaagttaaat | aacttactgtacaaattggcgctgt | |||
Mapping_target | T04C10 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
WGS_Hawaiian_Waterston | |||||
WBStrain00006622 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022887 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00303075 | |||
WBGene00000221 | |||||
Transcript | T04C10.11.1 | VEP_consequence | splice_region_variant,intron_variant | ||
VEP_impact | LOW | ||||
HGVSc | T04C10.11.1:c.141+8C>T | ||||
Intron_number | 2/4 | ||||
T04C10.4.1 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T04C10.4.1:c.-115C>T | ||||
cDNA_position | 148 | ||||
Exon_number | 1/5 | ||||
T04C10.11.2 | VEP_consequence | splice_region_variant,intron_variant | |||
VEP_impact | LOW | ||||
HGVSc | T04C10.11.2:c.141+8C>T | ||||
Intron_number | 2/3 | ||||
Remark | [20081124 db] this Variation was previously named hw110007 | ||||
Method | WGS_Hawaiian_Waterston |