WormBase Tree Display for Variation: WBVar00082175
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WBVar00082175 | Name | Public_name | WBVar00082175 | ||
---|---|---|---|---|---|
Other_name (11) | |||||
HGVSg | CHROMOSOME_X:g.10107934T>C | ||||
Sequence_details | SMap | S_parent | Sequence | T06H11 | |
Flanking_sequences | agcaaaaacctctcatatttttccg | catcagtcatttcattgtacttgag | |||
Mapping_target | T06H11 | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (38) | |||||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
WBPerson6900 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
WGS_Pasadena_Quinlan | |||||
History | Acquires_merge | WBVar00099774 | |||
Status | Live | ||||
Affects | Gene | WBGene00198156 | |||
WBGene00006792 | |||||
Transcript | T06H11.1f.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | T06H11.1f.1:c.562-141A>G | ||||
Intron_number | 5/14 | ||||
T06H11.1e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T06H11.1e.1:c.217-141A>G | ||||
Intron_number | 3/13 | ||||
T06H11.1d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T06H11.1d.1:c.442-141A>G | ||||
Intron_number | 2/11 | ||||
T06H11.1b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T06H11.1b.1:c.412-141A>G | ||||
Intron_number | 4/12 | ||||
T06H11.12 | VEP_consequence | non_coding_transcript_exon_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T06H11.12:n.49T>C | ||||
cDNA_position | 49 | ||||
Exon_number | 1/1 | ||||
T06H11.1g.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T06H11.1g.1:c.286-141A>G | ||||
Intron_number | 3/12 | ||||
T06H11.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T06H11.1a.1:c.526-141A>G | ||||
Intron_number | 2/11 | ||||
T06H11.1c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T06H11.1c.1:c.298-141A>G | ||||
Intron_number | 3/13 | ||||
Remark | [20081124 db] this Variation was previously named hw106535 | ||||
Method | WGS_Hawaiian_Waterston |