WormBase Tree Display for Variation: WBVar00066695
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| WBVar00066695 | Name | Public_name | WBVar00066695 | ||
|---|---|---|---|---|---|
| Other_name | pas24936 | ||||
| cewivar00108538 | |||||
| CE25004:p.Glu3Gly | |||||
| F54F2.2b.1:c.-516T>C | |||||
| F54F2.2a.4:c.-1157T>C | |||||
| F54F2.2a.3:c.-1157T>C | |||||
| F54F2.14.1:c.*86T>C | |||||
| F54F2.2a.2:c.-1206T>C | |||||
| F54F2.5.1:c.8A>G | |||||
| HGVSg | CHROMOSOME_III:g.8792331T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | F54F2 | |
| Flanking_sequences | ccattttgagtgtaatataaactcacaacattatcaaacatttcccgcgaattctttactaccattttattttcgtagtgcctccgagaagcacgctcggtaacagcttcaatgtcggctgcaacatcttcataaaccaaaggtccactttcaaacaaattcgtcatttttttaggtgggacttcctgtggagaaggtgtattaggagcttgtgattcttgagaattcagataataatatgtttttccattttcggaaacgattggaggtggtggcgaaggatcaccggtctcaagtgct | cgctcatttcttttctgaaattattggaaaattattttgatctccttacgttcagaaggaggagcaagtaaagatatttgcgcaggtcacggaataccgtgataatgattttcgattaaaactttaaaaaagagagagagagagagagagagagagagagagagagacattcgatggaattattctaaaaagctcgaccattagtactgcattgatttacaaagaaggcaaaaacaatgacgctttttgcgaaaactggaataggagcgccgcatgcgcatgttcttatttaactatttt | |||
| Mapping_target | F54F2 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (45) | |||||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01447240 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00269391 | |||
| WBGene00018833 | |||||
| WBGene00006975 | |||||
| Transcript | F54F2.2a.3 | VEP_consequence | 5_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F54F2.2a.3:c.-1157T>C | ||||
| cDNA_position | 340 | ||||
| Exon_number | 2/18 | ||||
| F54F2.2a.4 | VEP_consequence | 5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F54F2.2a.4:c.-1157T>C | ||||
| cDNA_position | 787 | ||||
| Exon_number | 1/17 | ||||
| F54F2.2a.2 | VEP_consequence | 5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F54F2.2a.2:c.-1206T>C | ||||
| cDNA_position | 797 | ||||
| Exon_number | 1/16 | ||||
| F54F2.5.1 (12) | |||||
| F54F2.2b.1 | VEP_consequence | 5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F54F2.2b.1:c.-516T>C | ||||
| cDNA_position | 505 | ||||
| Exon_number | 1/8 | ||||
| F54F2.14.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F54F2.14.1:c.*86T>C | ||||
| cDNA_position | 242 | ||||
| Exon_number | 4/4 | ||||
| Method | WGS_Pasadena_Quinlan |
