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WormBase Tree Display for Variation: WBVar00064274

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Name Class

WBVar00064274NamePublic_nameWBVar00064274
Other_name (13)
HGVSgCHROMOSOME_X:g.10662630A>C
Sequence_detailsSMapS_parentSequenceF11A1
Flanking_sequencestttgcaccagaaaaaactacgcggaatctccattacaaaccggttgattgttgtataggacaaatccagacaacagttgtttttgaacttttttcattgaatgtctcggattattgggtgttgatgagtgtctgtctgcatgacaaatttgttttaaacgaagggacttaagattaaacagatgcgaacatattgagatatatccctttttaggttgttagtttagcatatcaaagttttttagtcaatgtgagaatattctcatatactaaaaatcacgcgcaaaaattatccatcgcggaataaacaagcagaaaatctaggtaaccagtgatctggcttaattggaatcagtatgaattcatgtgacttttttgctttgtttttgccaatatcgaaatcaacttagcttctcttgttaaatttaatttgtatttaatattaatattaaacatgtttttcagtatccattgacatccccagtcggctctagtgcatctgactctccaccaaaccgaagtttaacaatgatgcacaacggcgaaaaaagtccagatggcgtaagtgggagtgctggaaaagtaaaaatgaaacttgtaa
Mapping_targetF11A1
Type_of_mutationSubstitutionAC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (187)
LaboratoryQX
RW
EU
PersonWBPerson6900
WBPerson1730
WBPerson1562
AnalysisWGS_Pasadena_Quinlan
Million_mutation_project_reanalysis
SNP_Swan
WGS_Hawaiian_Waterston
WGS_Andersen
HistoryAcquires_mergeWBVar00082696
WBVar01470903
WBVar00274500
StatusLive
AffectsGeneWBGene00000908
TranscriptF11A1.3b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF11A1.3b.1:c.661-165A>C
Intron_number6/14
F11A1.3e.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF11A1.3e.2:c.661-165A>C
Intron_number8/18
F11A1.3e.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF11A1.3e.1:c.661-165A>C
Intron_number9/19
F11A1.3e.4VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF11A1.3e.4:c.661-165A>C
Intron_number8/18
F11A1.3f.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF11A1.3f.1:c.736-165A>C
Intron_number8/17
F11A1.3a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF11A1.3a.1:c.838-165A>C
Intron_number8/17
F11A1.3g.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF11A1.3g.1:c.838-165A>C
Intron_number9/18
F11A1.3e.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF11A1.3e.3:c.661-165A>C
Intron_number10/20
F11A1.3d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF11A1.3d.1:c.736-165A>C
Intron_number7/15
ReferenceWBPaper00040707
WBPaper00005369
MethodWGS_Pasadena_Quinlan