WormBase Tree Display for Variation: WBVar00064274
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WBVar00064274 | Name | Public_name | WBVar00064274 | ||
---|---|---|---|---|---|
Other_name (13) | |||||
HGVSg | CHROMOSOME_X:g.10662630A>C | ||||
Sequence_details | SMap | S_parent | Sequence | F11A1 | |
Flanking_sequences | tttgcaccagaaaaaactacgcggaatctccattacaaaccggttgattgttgtataggacaaatccagacaacagttgtttttgaacttttttcattgaatgtctcggattattgggtgttgatgagtgtctgtctgcatgacaaatttgttttaaacgaagggacttaagattaaacagatgcgaacatattgagatatatccctttttaggttgttagtttagcatatcaaagttttttagtcaatgtgagaatattctcatatactaaaaatcacgcgcaaaaattatccatcgcg | gaataaacaagcagaaaatctaggtaaccagtgatctggcttaattggaatcagtatgaattcatgtgacttttttgctttgtttttgccaatatcgaaatcaacttagcttctcttgttaaatttaatttgtatttaatattaatattaaacatgtttttcagtatccattgacatccccagtcggctctagtgcatctgactctccaccaaaccgaagtttaacaatgatgcacaacggcgaaaaaagtccagatggcgtaagtgggagtgctggaaaagtaaaaatgaaacttgtaa | |||
Mapping_target | F11A1 | ||||
Type_of_mutation | Substitution | A | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (187) | |||||
Laboratory | QX | ||||
RW | |||||
EU | |||||
Person | WBPerson6900 | ||||
WBPerson1730 | |||||
WBPerson1562 | |||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
SNP_Swan | |||||
WGS_Hawaiian_Waterston | |||||
WGS_Andersen | |||||
History | Acquires_merge | WBVar00082696 | |||
WBVar01470903 | |||||
WBVar00274500 | |||||
Status | Live | ||||
Affects | Gene | WBGene00000908 | |||
Transcript | F11A1.3b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F11A1.3b.1:c.661-165A>C | ||||
Intron_number | 6/14 | ||||
F11A1.3e.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F11A1.3e.2:c.661-165A>C | ||||
Intron_number | 8/18 | ||||
F11A1.3e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F11A1.3e.1:c.661-165A>C | ||||
Intron_number | 9/19 | ||||
F11A1.3e.4 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F11A1.3e.4:c.661-165A>C | ||||
Intron_number | 8/18 | ||||
F11A1.3f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F11A1.3f.1:c.736-165A>C | ||||
Intron_number | 8/17 | ||||
F11A1.3a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F11A1.3a.1:c.838-165A>C | ||||
Intron_number | 8/17 | ||||
F11A1.3g.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F11A1.3g.1:c.838-165A>C | ||||
Intron_number | 9/18 | ||||
F11A1.3e.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F11A1.3e.3:c.661-165A>C | ||||
Intron_number | 10/20 | ||||
F11A1.3d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F11A1.3d.1:c.736-165A>C | ||||
Intron_number | 7/15 | ||||
Reference | WBPaper00040707 | ||||
WBPaper00005369 | |||||
Method | WGS_Pasadena_Quinlan |