WormBase Tree Display for Variation: WBVar00061005
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| WBVar00061005 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00061005 | |||
| Other_name | pas23798 | ||||
| haw43865 | |||||
| cewivar00107061 | |||||
| R01H2.1.1:c.162A>T | |||||
| R01H2.4b.1:c.75+40T>A | |||||
| R01H2.4a.1:c.466-547T>A | |||||
| CE00728:p.Thr54= | |||||
| HGVSg | CHROMOSOME_III:g.7063041A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | R01H2 | |
| Flanking_sequences | cgtaaaaactaaaactttgatatgcctacagtagccggggttctacaccaaaagagcagtattgacaaaagacaggcgtaggtggccttaaaggcaagaacgcgtttttgtgccaacatgtaaacaaattgataatatgatggcttctggcaaggcaacaagcctatatagccacgctgaaatcttcctcccatccaaacaagaatctggaatcaagaagaaaagcggagaggaaacccaacagaccaagggagccaccattgaatctagccgaatcaaccaaaaccgtgctgagaggac | cagaggttccaaactcaatgctcaaaaagaaaaccatacgagattcgtcagggaattcctgagaggagctcctccaaacaggatcctgggaacaagaccgccagcattgaacatcgaggaagagaaaatccttccgaaacccacgagagttgaattggcaagaatgcgatgtggccactcactgatgatccccaaatacaaggagagaattgaaggtaccccggttggtacaagtggttgtggggataaagaaggagggatagtacactttctatgcggaagaagaaaaccaatcaagat | |||
| Mapping_target | R01H2 | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (150) | |||||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01446446 | |||
| WBVar01446447 | |||||
| WBVar00063717 | |||||
| WBVar01265021 | |||||
| WBVar01330533 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00019812 | |||
| WBGene00019809 | |||||
| Transcript | R01H2.4b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | R01H2.4b.1:c.75+40T>A | ||||
| Intron_number | 1/7 | ||||
| R01H2.1.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | R01H2.1.1:c.162A>T | ||||
| HGVSp | CE00728:p.Thr54= | ||||
| cDNA_position | 162 | ||||
| CDS_position | 162 | ||||
| Protein_position | 54 | ||||
| Exon_number | 1/1 | ||||
| Codon_change | acA/acT | ||||
| Amino_acid_change | T | ||||
| R01H2.4a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | R01H2.4a.1:c.466-547T>A | ||||
| Intron_number | 6/13 | ||||
| Reference | WBPaper00037807 | ||||
| Method | WGS_Pasadena_Quinlan |
