WormBase Tree Display for Variation: WBVar00057590
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| WBVar00057590 | Name | Public_name | WBVar00057590 | ||
|---|---|---|---|---|---|
| Other_name | pas23115 | ||||
| snp_F31E3[3] | |||||
| haw43772 | |||||
| haw143800 | |||||
| cewivar00106965 | |||||
| F31E3.2a.1:c.*297G>T | |||||
| F31E3.2c.1:c.*1228G>T | |||||
| F31E3.2b.1:c.*22G>T | |||||
| HGVSg | CHROMOSOME_III:g.6977893G>T | ||||
| Sequence_details | SMap | S_parent | Sequence | F31E3 | |
| Flanking_sequences | gtaatctgccaaattattgaaaaattgaactttttgagaaactcggtgcattcttgcatgtttaaattctacaatttttgaatatttattcatcagttaaatataaaactgtgaaaatattttttcgatcgacttccaatattatgaaaggtgaaaactgagtaattgccattttgacagcaaattaaaatttcactatctgacctcaaaaactaaatatgcaaatcaaatattatatttcagttcgaccgttttgactatttcaatgatcgattctaatgtgatgcatatcgatttgag | gttggaatgaaaacgagctctttttattgctccgtcactctcttttactctgtgataaaataccctgttaccatcatcatcaattcacttttctgtatgatacgggcgctaataaatattttacaacatgcttgatttcccacagatttcgtttaaacatatatcataaccatcaaatgggatgttctacatgtagaacaaattatactttcttccaataaatacagaattaaaaatttcctaaataaatatgaactgttttgggattttttacacttattttcaaggctgcgataagaa | |||
| Mapping_target | F31E3 | ||||
| Type_of_mutation | Substitution | G | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (29) | |||||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00563665 | |||
| WBVar00063252 | |||||
| WBVar00244493 | |||||
| WBVar01264912 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00017950 | |||
| Transcript | F31E3.2b.1 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F31E3.2b.1:c.*22G>T | ||||
| cDNA_position | 1813 | ||||
| Exon_number | 12/12 | ||||
| F31E3.2a.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F31E3.2a.1:c.*297G>T | ||||
| cDNA_position | 1747 | ||||
| Exon_number | 11/11 | ||||
| F31E3.2c.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F31E3.2c.1:c.*1228G>T | ||||
| cDNA_position | 1656 | ||||
| Exon_number | 11/11 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00004703 | |||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
