WormBase Tree Display for Variation: WBVar00052887
expand all nodes | collapse all nodes | view schema
| WBVar00052887 | Name | Public_name | WBVar00052887 | ||
|---|---|---|---|---|---|
| Other_name | snp_B0478[1] | ||||
| CE4-140 | |||||
| haw57609 | |||||
| cewivar00040489 | |||||
| T22D1.12b.1:c.18-65T>A | |||||
| HGVSg | CHROMOSOME_IV:g.6931184A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | B0478 | |
| Flanking_sequences | agcacaccaacccatacattggcactattggggatccatcaaaatttattttgtagagactgttctggaaaaaattcaattggagatgcaaaacaggaaaactcaaatacctgataattttgcatttctgcaaaccaatcgcagtgaatttctgtccattgtcccgtagagtttggcggttgcatactgaaattaaaagtttatagtttcagaaatttaaaaatataaaaatagattttaaaaaagactt | aaaaaaattcaattgagtattttatttcactgcgtaataaaatcttctacggttctagactctagaacctagagtttaacataaaaccttgtaacagtaaaaaaatttaaaacgtacaaactatgttttaatagtatgaaatttaaaaacaaaatgaaatccatggttatcacaacataaactgccaaagggggtcaaataggaaatggaaaactacaataggattcagagagacattctagcataagaa | |||
| Mapping_target | B0478 | ||||
| Type_of_mutation | Substitution | a | t | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Confirmed_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000032 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004602 | From_analysis | SNP_Swan | |||
| SNP_Wicks | |||||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00022899 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| Analysis | SNP_Swan | ||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00190333 | |||
| WBVar00242865 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00020689 | |||
| Transcript | T22D1.12b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T22D1.12b.1:c.18-65T>A | ||||
| Intron_number | 1/7 | ||||
| Reference | WBPaper00004703 | ||||
| WBPaper00005369 | |||||
| Method | SNP_Swan |
