WormBase Tree Display for Variation: WBVar00050476
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| WBVar00050476 | Name | Public_name | WBVar00050476 | ||
|---|---|---|---|---|---|
| Other_name | pas21692 | ||||
| haw105016 | |||||
| cewivar00058477 | |||||
| K09F5.6a.1:c.467-354G>A | |||||
| K09F5.7:n.22C>T | |||||
| K09F5.6b.1:c.467-354G>A | |||||
| HGVSg | CHROMOSOME_X:g.7721209G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | K09F5 | |
| Flanking_sequences | acataacccacattacactttgatttacatccaacatttcaacaatcacccaaggacacattctagcgaacacgcacaagaacaatataaatgctaatttattagcggtagtgaggagggggagggtgtcgagtggctgccaacagtcacactcattgagaatagtgaaaggacggtattattgaaatataacacgaatacgagtattgatatccgcctcattgcattttatatgtgagtgaatgtggtagggatttggagttgaaaaaagagaaattcaaaatcaagaaggttgaatga | tttggaaattgacacgtgagcaaaagtcgagcaaaactattgaatgaatcagaatggttcgaaatgtccacaaaagacacaattttataataacacctattgaattgcgctaaattcaactaaaaacagctaaataatctaaaatttaacaaagttgtccgcttggatggccggtatttaatttctatgtaatagttcaacgagaaacaaataataattcaacgaaaagcggaggtatcagctaaaatacatgacggttttgagtctattggtattggtaaattgaaagcaaattgttct | |||
| Mapping_target | K09F5 | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (35) | |||||
| Laboratory | RW | ||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00080656 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00044698 | |||
| WBGene00196719 | |||||
| Transcript | K09F5.6b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | K09F5.6b.1:c.467-354G>A | ||||
| Intron_number | 5/14 | ||||
| K09F5.6a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | K09F5.6a.1:c.467-354G>A | ||||
| Intron_number | 5/13 | ||||
| K09F5.7 | VEP_consequence | non_coding_transcript_exon_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | K09F5.7:n.22C>T | ||||
| cDNA_position | 22 | ||||
| Exon_number | 1/1 | ||||
| Method | WGS_Pasadena_Quinlan |
