WormBase Tree Display for Variation: WBVar00049851
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WBVar00049851 | Evidence | Paper_evidence | WBPaper00040707 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00049851 | |||
Other_name | pas21567 | ||||
cewivar00058294 | |||||
C44E12.3d.1:c.296-371T>A | |||||
C44E12.3b.1:c.104-371T>A | |||||
C44E12.3e.1:c.296-371T>A | |||||
C44E12.3c.1:c.296-371T>A | |||||
C44E12.3a.1:c.124+292T>A | |||||
C44E12.3g.1:c.104-371T>A | |||||
C44E12.3f.1:c.104-371T>A | |||||
HGVSg | CHROMOSOME_X:g.7603993A>T | ||||
Sequence_details | SMap | S_parent | Sequence | C44E12 | |
Flanking_sequences | cattctcttttattcaactaattagatttgtacatcttttcttctaaaggtttcgggaagggctattttggttttttctcaaccaatattgtttcaaaaaaaatattgttgagtgaaaactattactcgtttagtcttgcaccggacactttaactctgacaactcatatctcggttcttataaacatttaacaaaattttaaactgccaatctatatttaaaaaaatatatgaaccagataagacagccaagaaacaaactttgaatggtgaaaaatgtggtgcaaggctgttaaaaaa | atagcaaaattgatctacatattcattttaaaaatacatcacttctcaaacaaaaagttaaattggcttaataaaaaacctgaattcaccaaatagttagagaacaacttttttctataagtttttaacctgaaatgtttcagtagaactttgtaacctggatacagtattctgtaaagcggtaaaaaacgtcctatggtattaacacgtttctggaataaccattaacacgcttgctttgaataaaagtttaaacttagtttttggtatctagcgggtattataacttacctttcaatg | |||
Mapping_target | C44E12 | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (110) | |||||
Laboratory | QX | ||||
Person | WBPerson6900 | ||||
WBPerson1730 | |||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
WGS_Andersen | |||||
History | Acquires_merge | WBVar01469775 | |||
Status | Live | ||||
Affects | Gene | WBGene00006671 | |||
Transcript | C44E12.3d.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C44E12.3d.1:c.296-371T>A | ||||
Intron_number | 2/12 | ||||
C44E12.3b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C44E12.3b.1:c.104-371T>A | ||||
Intron_number | 1/10 | ||||
C44E12.3c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C44E12.3c.1:c.296-371T>A | ||||
Intron_number | 1/11 | ||||
C44E12.3a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C44E12.3a.1:c.124+292T>A | ||||
Intron_number | 1/10 | ||||
C44E12.3f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C44E12.3f.1:c.104-371T>A | ||||
Intron_number | 2/13 | ||||
C44E12.3g.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C44E12.3g.1:c.104-371T>A | ||||
Intron_number | 1/11 | ||||
C44E12.3e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C44E12.3e.1:c.296-371T>A | ||||
Intron_number | 1/10 | ||||
Reference | WBPaper00040707 | ||||
Method | WGS_Pasadena_Quinlan |