WormBase Tree Display for Variation: WBVar00048970
expand all nodes | collapse all nodes | view schema
WBVar00048970 | Name | Public_name | WBVar00048970 | ||
---|---|---|---|---|---|
Other_name | haw90892 | ||||
cewivar00257697 | |||||
C38D9.2.4:c.1050C>T | |||||
C38D9.2.3:c.1050C>T | |||||
C38D9.2.2:c.1050C>T | |||||
C38D9.2.1:c.1050C>T | |||||
CE47350:p.Asn350= | |||||
HGVSg | CHROMOSOME_V:g.17571071C>T | ||||
Sequence_details | SMap | S_parent | Sequence | C38D9 | |
Flanking_sequences | aagctctagggatgagatctgagaa | gtggctccacaatggaaccattacc | |||
Mapping_target | C38D9 | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (18) | |||||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00008010 | |||
Transcript | C38D9.2.4 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | C38D9.2.4:c.1050C>T | ||||
HGVSp | CE47350:p.Asn350= | ||||
cDNA_position | 1240 | ||||
CDS_position | 1050 | ||||
Protein_position | 350 | ||||
Exon_number | 7/10 | ||||
Codon_change | aaC/aaT | ||||
Amino_acid_change | N | ||||
C38D9.2.2 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | C38D9.2.2:c.1050C>T | ||||
HGVSp | CE47350:p.Asn350= | ||||
cDNA_position | 3213 | ||||
CDS_position | 1050 | ||||
Protein_position | 350 | ||||
Exon_number | 7/10 | ||||
Codon_change | aaC/aaT | ||||
Amino_acid_change | N | ||||
C38D9.2.3 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | C38D9.2.3:c.1050C>T | ||||
HGVSp | CE47350:p.Asn350= | ||||
cDNA_position | 1228 | ||||
CDS_position | 1050 | ||||
Protein_position | 350 | ||||
Exon_number | 7/10 | ||||
Codon_change | aaC/aaT | ||||
Amino_acid_change | N | ||||
C38D9.2.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | C38D9.2.1:c.1050C>T | ||||
HGVSp | CE47350:p.Asn350= | ||||
cDNA_position | 1598 | ||||
CDS_position | 1050 | ||||
Protein_position | 350 | ||||
Exon_number | 8/11 | ||||
Codon_change | aaC/aaT | ||||
Amino_acid_change | N | ||||
Remark | [20081124 db] this Variation was previously named hw90892 | ||||
Method | WGS_Hawaiian_Waterston |