WormBase Tree Display for Variation: WBVar00047483
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| WBVar00047483 | Evidence | Paper_evidence | WBPaper00038208 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00047483 | |||
| Other_name | haw40619 | ||||
| haw141607 | |||||
| cewivar00195059 | |||||
| H14E04.2d.1:c.*12A>T | |||||
| H14E04.2b.1:c.*12A>T | |||||
| H14E04.2c.1:c.*12A>T | |||||
| H14E04.2a.1:c.*12A>T | |||||
| HGVSg | CHROMOSOME_III:g.2384582A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | H14E04 | |
| Flanking_sequences | cgaaatccgcttgatttatcgattt | ttgattttttttcccttcaaaatcc | |||
| Mapping_target | H14E04 | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | ||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006640 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00008273 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023138 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00561472 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00019199 | |||
| Transcript | H14E04.2a.1 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | H14E04.2a.1:c.*12A>T | ||||
| cDNA_position | 1745 | ||||
| Exon_number | 12/12 | ||||
| H14E04.2c.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | H14E04.2c.1:c.*12A>T | ||||
| cDNA_position | 1766 | ||||
| Exon_number | 13/13 | ||||
| H14E04.2b.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | H14E04.2b.1:c.*12A>T | ||||
| cDNA_position | 1756 | ||||
| Exon_number | 12/12 | ||||
| H14E04.2d.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | H14E04.2d.1:c.*12A>T | ||||
| cDNA_position | 1390 | ||||
| Exon_number | 9/9 | ||||
| Reference | WBPaper00038208 | ||||
| Remark | [20081124 db] this Variation was previously named hw40619 | ||||
| Method | WGS_Hawaiian_Waterston |
