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WormBase Tree Display for Variation: WBVar00046096

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Name Class

WBVar00046096NamePublic_nameWBVar00046096
Other_namepas20816
haw42556
haw142934
cewivar00106034
C48D5.2c.1:c.29+540T>A
C48D5.2a.1:c.1340+1201T>A
HGVSgCHROMOSOME_III:g.3595793T>A
Sequence_detailsSMapS_parentSequenceC48D5
Flanking_sequencesgaatgttattctcagataagcaaaatgattttctatattttggcattaattttaaatgaaacattttggaacaacatggtgcaatgtgatattttttagagttaacaaattttttgaaaaatcatcaacgcgaatggctagaaattagtaagtcggattttaagtttttgcacagtaccccagtgtttacaaaattttcaggcatatgtccgatgcaccatgtcttacacaaaattttttagtgtcacaaaactctcggggcctcgtttttcggaattcctgtgttacgtggcctaagaataaactgaaaaatatcggccaacgatatttctttagtttttttacgacagtttttgtacagcttgccaaaaatgatcttataagggtgttttatttgttttgcgagtacgattctcaataaaatgctccggactccttggccacgtagtaatcaccaagctgtgaaaggacatggtgcatcataaccatttatagcacgaaagatcccagatttgtactctttgtactatgaaaactgctgtatatagctgtgtgagagtgccctctcctcgaatgggtggtctccaaatacataaaata
Mapping_targetC48D5
Type_of_mutationSubstitutionTA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (101)
LaboratoryQX
AX
RW
PersonWBPerson6900
WBPerson4037
WBPerson1730
WBPerson1562
AnalysisWGS_Pasadena_Quinlan
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
WGS_Hawaiian_Waterston
WGS_Andersen
HistoryAcquires_mergeWBVar00562799
WBVar00057171
WBVar01262119
WBVar01445011
StatusLive
AffectsGeneWBGene00004213
TranscriptC48D5.2c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC48D5.2c.1:c.29+540T>A
Intron_number2/10
C48D5.2a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC48D5.2a.1:c.1340+1201T>A
Intron_number9/18
ReferenceWBPaper00038208
WBPaper00040707
WBPaper00037807
MethodWGS_Pasadena_Quinlan